BNL3971, BNL3971 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3971
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3971_orig
Source Typegenomic
Repeat Motif(TC)15
PCR ConditionAnnealing temperature: 55
Primer 1BNL3971_F: CACATATTTTTGCCTCACGC
Primer 2BNL3971_R: TGTGGACCCAAAAAGGAAGA
PolymorphismP_ BNL3971
CommentPrimer data obtained in 2000
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3971_origBNL3971_origGossypium hirsutumsequence_feature


Image
File NameLegend
45_FISH_GEN-178-1117_fig2.jpgBAC clones and their corresponding genetic markers of the 22 probes according to FISH signal patterns in Figure 1. [Image from Wang et al., 2008, GEN-178-1117]
46_FISH_GEN-178-1117_fig3.jpgTwo BAC translocations involving two chromosome pairs of At2 and A3 and At4 and A5 between G. arboreum and A-subgenome of G. hirsutum. [Image from Wang et al., 2008, GEN-178-1117]
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
13-79 x NM24016, RIL (2008)AD_ch02_At.02N/A29.1BNL3971View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch02_At.02N/A53.1BNL3971View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch02_At.02N/A84.3BNL3971View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch02_At.02N/A45.54BNL3971View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch02_At.02N/A36.49BNL3971View
6Handan-208 x Pima-90, F2:3 (2007)AD_ch02_At.02N/A2.5BNL3971View
7JLZM x ZJXSLS, F2 (2008)A_JZ_A02N/A41.2BNL3971View
8Palmeri x K-101, F2 (2007)AD_ch02_At.02N/A88.7BNL3971View
9AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A72BNL3971View
10TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A48.3BNL3971View
11TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A59.5BNL3971View
12Xinluzao-1 x Hai-7124, F2 (2008)AD_ch02_At.02N/A117.3BNL3971View
13Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A78.32BNL3971View
14AD-genome wide Reference Map (2009)AD_ch02_At.02N/A96BNL3971View
15TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A60.2BNL3971View
16CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A96.2BNL3971View
17SG 747 x Giza 75, BIL (2013)AD_ch02_At.02N/A56.2BNL3971View
18Monsanto SSR Bin Map, (2009)AD_ch02_At.02N/A61BNL3971View
19LMY22 x LY343, RIL (2016)chr.2N/A28.3BNL3971View
20Handan-208 x Pima-90, F2:3 (2007)AD_ch17_Dt.03N/A141.1BNL3971bView
21TM-1 x Hai-7124, BC1 (2007)AD_ch02_At.02N/A59.6BNL3971-140View
22TM-1 x Hai-7124, BC1 (2008)AD_ch02_At.02N/A48.12BNL3971-140View
23Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch02_At.02N/A83BNL3971-140View
24TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A45.3BNL3971-140View
25TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A60.19BNL3971View
26PD 94042 x (AD)4-08, F2 (2016)AD_ch02_At.02N/A4.7BNL3971View
Sequence
>BNL3971 ID=BNL3971; Name=BNL3971; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
CACATATTTTTGCCTCACGCTCTCCCTCTTATGTCAGTTTCTCCCCTTCT
CTTTCAAGGTTTCAGATTTTGATTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTTTCTCCTTTGATTTTCTTTTCTTCCTTTTTGGGTCCACA