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Map Overview
Name | Guazuncho-2 x VH8-4602, BC1 (2005) |
Species | Gossypium hirsutum x barbadense
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Population type | BC1 |
Source url | http://tropgenedb.cirad.fr/tropgene/JSP/index.jsp |
Genome group | AD |
Map type | genetic |
Map unit | cM |
Maternal parent | Guazuncho-2 |
Paternal parent | VH8-4602 |
Population size | 75 |
Number of loci | 1274 |
Number of QTL | 149 |
Number of linkage groups | 27 |
Publication | [view all] |
Contact | TropGene
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Stock
Name | Type | Details |
Guazuncho-2 x VH8-4602, BC1 | population | Alias: | GV-BC1 | Description: | genetic mapping | Population size: | 75 | Secondary id: | cdbpop_000018 | Pedigree: | Guazuncho-2 / VH8-4602 |
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Publication
Year | Publications |
2003 | Lacape JM, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B, Hau B. A combined RFLP-SSR-AFLP map of tetraploid cotton based on a Gossypium hirsutum x Gossypium barbadense backcross population. Genome / National Research Council Canada = Génome / Conseil national de recherches Canada. 2003 Aug; 46(4):612-26. |
2004 | Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM. Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and applied genetics. 2004 Jun; 109(1):167-75 |
Map Loci
This map contains 1,274 marker loci:
Linkage Group | Marker Name | Locus Name | Type | Position |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | At16 | At16 | marker_locus | 164.8 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | JESPR0110 | JESPR110 | marker_locus | 171.7 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | A1517 | A1517 | marker_locus | 173.1 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | JESPR0208 | JESPR208a | marker_locus | 174.4 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | BNL1414 | BNL1414a | marker_locus | 174.4 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | BNL1030 | BNL1030a | marker_locus | 174.4 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | CIR0194 | CIR194 | marker_locus | 174.4 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | MGHES0046 | MGHES-46a | marker_locus | 184 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | E5M1_110 | E5M1_110 | marker_locus | 185 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | E7M1_238 | E7M1_238 | marker_locus | 204.8 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | E3M1_310 | E3M1_310 | marker_locus | 216.6 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | BNL0597 | BNL597b | marker_locus | 220.2 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr23 | BNL4053 | BNL4053a | marker_locus | 222.9 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | CIR0026 | CIR026 | marker_locus | 0 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | CIR0388 | CIR388 | marker_locus | 7.3 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | JESPR0157 | JESPR157a | marker_locus | 27 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | BNL3860 | BNL3860 | marker_locus | 39 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | pVNC244 | pVNC244 | marker_locus | 41 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | CIR0119 | CIR119b | marker_locus | 43.2 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | CIR0354 | CIR354b | marker_locus | 47.3 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | E5M4_345 | E5M4_345 | marker_locus | 51.3 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | A1107 | A1107 | marker_locus | 54 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | G1074 | G1074b | marker_locus | 54 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | BNL1521 | BNL1521 | marker_locus | 63.5 cM |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | BNL2961 | BNL2961b | marker_locus | 63.5 cM |
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Map QTL
This map contains 149 QTL:
Linkage Group | Name | Type | Start | Stop | Peak |
Guazuncho-2 x VH8-4602, BC1 (2005).chr08/lgA02 | qMIC.GV-BC1_ch08 | QTL | 171.6 cM | 175.6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr18 | qFM.GV-BC1_ch18.1 | QTL | 23.7 cM | 35.7 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr18 | qFM.GV-BC1_ch18.2 | QTL | 25.2 cM | 26.2 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr02 | qFM.GV-BC1_ch02 | QTL | 162.8 cM | 163.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr22 | qFM.GV-BC1_ch22 | QTL | 130.3 cM | 131.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | qFM.GV-BC1_ch03 | QTL | 28.7 cM | 36.7 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr05 | qFM.GV-BC1_ch05 | QTL | 176.9 cM | 177.9 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qFM.GV-BC1_ch06 | QTL | 0 cM | 6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr08/lgA02 | qFM.GV-BC1_ch08 | QTL | 168.6 cM | 179.6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr24/lgD03 | qDTS.GV-BC1_ch24 | QTL | 136.8 cM | 149.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qDTS.GV-BC1_ch06 | QTL | 138.1 cM | 139.1 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr01 | qUHML.GV-BC1_ch01 | QTL | 215.2 cM | 216.2 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr13/lgA01 | qUHML.GV-BC1_ch13.1 | QTL | 37.6 cM | 63.6 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr13/lgA01 | qUHML.GV-BC1_ch13.2 | QTL | 40.7 cM | 48.7 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr20 | qUHML.GV-BC1_ch20 | QTL | 263.1 cM | 264.1 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr21/lgD02 | qUHML.GV-BC1_ch21 | QTL | 194.8 cM | 195.8 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr25 | qUHML.GV-BC1_ch25 | QTL | -0.5 cM | 0.5 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr26 | qUHML.GV-BC1_ch26.1 | QTL | 56.7 cM | 98.7 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr26 | qUHML.GV-BC1_ch26.2 | QTL | 133.3 cM | 138.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | qUHML.GV-BC1_ch03.1 | QTL | 53.1 cM | 67.1 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr03 | qUHML.GV-BC1_ch03.2 | QTL | 120 cM | 132 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr05 | qUHML.GV-BC1_ch05.1 | QTL | 26.3 cM | 43.3 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr05 | qUHML.GV-BC1_ch05.2 | QTL | 258 cM | 259 cM | - |
Guazuncho-2 x VH8-4602, BC1 (2005).chr06 | qUHML.GV-BC1_ch06 | QTL | 138.1 cM | 139.1 cM | - |
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