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Marker Overview
| Name | CIR0026 |
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| Alias | CIR26
CIR026
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| Genbank ID | AJ566975 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ566975
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| Source Type | genomic |
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| Repeat Motif | (AC)10 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | CIR026_F: AGAGCCTAAGTAAAGCCA |
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| Primer 2 | CIR026_R: GATTTCCTTGATGTTTCTC |
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| Product Length | 106 |
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| Polymorphism | P_ CIR0026 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch24_Dt.08 | N/A | 135.13 | CIR026 | View |
| 2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch24_Dt.08 | N/A | 0 | CIR026 | View |
| 3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch24_Dt.08 | N/A | 0 | CIR026 | View |
| 4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch24_Dt.08 | N/A | 0.83 | CIR026 | View |
| 5 | TM-1 x 3-79, RIL (2012) | AD_ch24_Dt.08 | N/A | 112.76 | CIR026 | View |
| 6 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch24_Dt.08 | N/A | 207.3 | CIR026 | View |
| 7 | TM-1 x 3-79, RIL (2014) | AD_ch24_Dt.08 | N/A | 118.4 | CIR026 | View |
| 8 | AD-genome wide Reference Map (2009) | AD_ch24_Dt.08 | N/A | 220 | cir0026 | View |
| 9 | TM-1 x Hai-7124, BC1 (2008) | AD_ch24_Dt.08 | N/A | 18.02 | CIR026-105 | View |
| 10 | TM-1 x Hai-7124, BC1 (2007) | AD_ch24_Dt.08 | N/A | 93.7 | CIR026-105 | View |
| 11 | TM-1 x Hai-7124, BC1 (2012) | AD_ch24_Dt.08 | N/A | 148.2 | CIR026-105 | View |
| 12 | TM-1 x 3-79, RIL (2012.v3) | AD_ch24_Dt.08 | N/A | 118.8 | CIR026 | View |
| 13 | MGG-293-793, MAGIC (2018) | AD_ch24_Dt.08 | N/A | 14.1 | CIR026 | View |
Sequence
>CIR0026 ID=CIR0026; Name=CIR0026; organism=Gossypium hirsutum; type=genetic_marker; length=109bp
AGAGCCTAAGTAAAGCCATTTCCATATCTAAACATTTCTTGCATAGAATG
ACCAAACAGAGCTTGACACACACACACACACACACTGTAAGAGAAACATC
AAGGAAATC
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