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Marker Overview
Name | CIR0354 |
Alias | CIR354
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Genbank ID | AJ567289 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567289
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Source Type | genomic |
Repeat Motif | (AC)6 |
PCR Condition | Annealing temperature: 51 |
Primer 1 | CIR354_F: CACAATCCTCAGCCA |
Primer 2 | CIR354_R: AGAGAAGGAAAGAGGAAA |
Product Length | 126 |
Polymorphism | P_ CIR0354 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
File Name | Legend |
48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch08_At.08 | N/A | 75.7 | CIR354a | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch24_Dt.08 | N/A | 47.3 | CIR354b | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch24_Dt.08 | N/A | 41.19 | CIR354 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch08_At.08 | N/A | 55.21 | CIR354 | View |
5 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch24_Dt.08 | N/A | 29.81 | CIR354 | View |
6 | Yumian-1 x T586, F2:7 (2008) | AD_ch24_Dt.08 | N/A | 0 | CIR354 | View |
7 | Yumian-1 x T586, RIL (2006) | AD_ch24_Dt.08 | N/A | 48.7 | CIR354 | View |
8 | Yumian-1 x T586, RIL (2015) | AD_ch24_Dt.08 | N/A | 114.7 | CIR354 | View |
9 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch08_At.08 | N/A | 17.3 | CIR354 | View |
10 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch08_At.08 | N/A | 82.6 | CIR354* | View |
11 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 57 | cir0354 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch24_Dt.08 | N/A | 182 | cir0354 | View |
13 | Yumian-1 x T586, RIL (2009) | AD_ch24_Dt.08 | N/A | 79.9 | CIR354/170t(C24) | View |
14 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch08_At.08 | N/A | 222.4 | CIR354b | View |
15 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch24_Dt.08 | N/A | 57.8 | CIR354a | View |
16 | TM-1 x Hai-7124, BC1 (2012) | AD_ch01_At.01 | N/A | 92.2 | CIR354-230 | View |
Sequence
>CIR0354 ID=CIR0354; Name=CIR0354; organism=Gossypium hirsutum; type=genetic_marker; length=126bp CACAATCCTCAGCCATCGGCGATACTTCTTCATCAAATCGATAAAATTTA CAAAAAAAAAAAATGGCAAATTTATAAAAACATACACACACACACTTCGC CTGGTGAGTTTCCTCTTTCCTTCTCT
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