CIR0194, CIR0194 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0194
AliasCIR194
Genbank IDAJ567141
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567141
Source Typegenomic
Repeat Motif(CA)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR194_F: ATTGTCTTGGACTTTGGT
Primer 2CIR194_R: TCAGTTGAAAGTATTCCCT
Product Length139
PolymorphismP_ CIR0194
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KI_09chromosomeKI_09:33227117..33227253 +
A09chromosomeA09:75895891..75896029 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567141AJ567141Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch23_Dt.09N/A100.6CIR194View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch23_Dt.09N/A67.8CIR194View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch23_Dt.09N/A102.54CIR194View
4Zhongmiansuo-12 x 8891, RIL (2007)AD_ch23_Dt.09N/A61.5CIR194View
5Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch23_Dt.09N/A174.4CIR194View
6Yumian-1 x T586, RIL (2006)AD_ch23_Dt.09N/A28.1CIR194View
7Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A68.9CIR194View
8CCRI-35 x Yumian-1, RIL (2015)AD_ch23_Dt.09N/A34.2CIR194View
9AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A147cir0194View
10Yumian-1 x T586, RIL (2009)AD_ch23_Dt.09N/A28.1CIR194/190y(C23)View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch23_Dt.09N/A157.35CIR194View
Sequence
>CIR0194 ID=CIR0194; Name=CIR0194; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
ATTGTCTTGGACTTTGGTCAGTGTTCTTGCACACACACACACACTTTTTT
TCAAAATATTATTTTAAAGCTTCTTTGATGGTAAAAAAGAATCTTGTTGA
TTTCTTTTACTCTCTTCTATAGGGAATACTTTCAACTGA