CIR0388, CIR0388 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0388
AliasCIR388
Genbank IDAJ567315
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567315
Source Typegenomic
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 51
Primer 1CIR388_F: TTAAGCATCCAACAAGG
Primer 2CIR388_R: TCCAACTTTTGGTCTATGT
Product Length248
PolymorphismP_ CIR0388
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:69191800..69192038 -
A08chromosomeA08:122986963..122987210 -
CM018209.1chromosomeCM018209.1:118344237..118344484 -
D5_08chromosomeD5_08:61028650..61028880 -
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:128615259..128615506 -
D10_08chromosomeD10_08:362940..363174 +
scaffold755.1supercontigscaffold755.1:366670..366908 -
scaffold2880.1supercontigscaffold2880.1:123416..123663 -
D08chromosomeD08:65190803..65191041 -
A08chromosomeA08:102860385..102860632 -
Ghir_D08chromosomeGhir_D08:68096486..68096724 -
Ghir_A08chromosomeGhir_A08:121868690..121868937 -
D08chromosomeD08:68349234..68349472 -
A08chromosomeA08:124327275..124327522 -
D08chromosomeD08:67944951..67945189 -
A08chromosomeA08:124788199..124788446 -
D08chromosomeD08:65244978..65245216 -
A08chromosomeA08:120452076..120452323 -
scaffold29872supercontigscaffold29872:12637..12884 +
Gbar_D08chromosomeGbar_D08:65246677..65246911 -
Gbar_A08chromosomeGbar_A08:119075553..119075800 -
A08chromosomeA08:119981784..119982031 -
CM017617.1chromosomeCM017617.1:118491661..118491908 -
CM017643.1chromosomeCM017643.1:128368941..128369188 -
CM017695.1chromosomeCM017695.1:119215960..119216207 -
D08chromosomeD08:68662250..68662488 -
A08chromosomeA08:126701302..126701549 -
Chr08chromosomeChr08:131227444..131227693 -
Chr08chromosomeChr08:132036593..132036840 -
Chr08chromosomeChr08:61932587..61932817 -
B_08chromosomeB_08:103750036..103750277 -
Chr04chromosomeChr04:63688867..63689103 -
Chr_04chromosomeChr_04:45850597..45850822 -
Chr04chromosomeChr04:36067379..36067624 -
E08chromosomeE08:121742938..121743181 -
F08chromosomeF08:103969463..103969706 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567315AJ567315Gossypium hirsutumsequence_feature


Image
File NameLegend
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A132.95CIR388View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch24_Dt.08N/A7.3CIR388View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch24_Dt.08N/A3.51CIR388View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch24_Dt.08N/A1.41CIR388View
5Emian-22 x 3-79, BC1 (2015)AD_ch24_Dt.08N/A9.9CIR388View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A146.5CIR388View
7AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A217cir0388View
8TM-1 x Hai-7124, BC1 (2008)AD_ch24_Dt.08N/A11.54CIR388-220View
9TM-1 x Hai-7124, BC1 (2007)AD_ch24_Dt.08N/A100.2CIR388-220View
10TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A155.3CIR388-220View
Sequence
>CIR0388 ID=CIR0388; Name=CIR0388; organism=Gossypium hirsutum; type=genetic_marker; length=248bp
TTAAGCATCCAACAAGGCGCTCTTGTTCTTTGAACCTATCACTAGCATCT
CTTCAAACATTAGAGCTCTCGGTTGAGTCATGAGATAAAACCCCCCACCA
ATGACATACGAAACATGATGAGGGTTCCGCCAGCTCTGAATGAATGGATG
ACATTAAGCAAACTTCTTCCAAAAAAGGCTTTATTCCCTCAAAACACACA
CACACACACCCATACACAAACATATATATACATAGACCAAAAGTTGGA