SC-1

Germplasm Overview

Alias

Image


File Name	Legend	Dataset
SA-1544_CS13-0915_IMG_3085_BN.jpg	[SA-1544] boll showing nectaries, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3086_B.jpg	[SA-1544] green boll, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3087_B.jpg	[SA-1544] green boll, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3088_BO.jpg	[SA-1544] boll open, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7603_F.jpg	[SA-1544] flower, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7604_LB.jpg	[SA-1544] leaf close up of the back surface, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7605_FO.jpg	[SA-1544] flower open, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_MG_9160_L.jpg	[SA-1544] leaf, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)

Phenotypic Data

Total 37 trait scores

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#	Dataset	Descriptor	Value	Environment	Plot
1	NCGC germplasm evaluation, CS13	population homogeneity	uniform	US_TX_CS_2013	915
2	NCGC germplasm evaluation, CS13	seed fuzz grade	high	US_TX_CS_2013	915
3	NCGC germplasm evaluation, CS13	seed type	free	US_TX_CS_2013	915
4	NCGC germplasm evaluation, CS13	stem color	green	US_TX_CS_2013	915
5	NCGC germplasm evaluation, CS13	stem gossypol glands	medium	US_TX_CS_2013	915
6	NCGC germplasm evaluation, CS13	stigma exsertion	normal	US_TX_CS_2013	915
7	NCGC germplasm evaluation, CS13	trichome density on leaf	moderate	US_TX_CS_2013	915
8	NCGC germplasm evaluation, CS13	trichome density on stem	moderate	US_TX_CS_2013	915
9	NCGC germplasm evaluation, CS13	plant height (m)	0.76	US_TX_CS_2013	915
10	NCGC germplasm evaluation, CS13	leaf nectaries	one, main vein	US_TX_CS_2013	915
11	NCGC germplasm evaluation, CS13	plot plant stand	0.25	US_TX_CS_2013	915
12	NCGC germplasm evaluation, CS13	productiveness	25-36 per plant	US_TX_CS_2013	915

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Ssr Genotype Data

Total 101 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	Du_2005	CIR0218	genetic_marker	164\|174\|179	CIR0218_164; CIR0218_174; CIR0218_179
2	Du_2005	GH325	genetic_marker	110\|135	GH325_110; GH325_135
3	Du_2005	GH329	genetic_marker	168	GH329_168
4	Du_2005	GH350	genetic_marker	155\|175\|88	GH350_155; GH350_175; GH350_88
5	Du_2005	GH422	genetic_marker	120	GH422_120
6	Du_2005	GH443	genetic_marker	150	GH443_150
7	Du_2005	GH447	genetic_marker	99	GH447_99
8	Du_2005	GH458	genetic_marker	85\|88	GH458_85; GH458_88
9	Du_2005	GH470	genetic_marker	110\|130	GH470_110; GH470_130
10	Du_2005	GH523	genetic_marker	125\|138\|160	GH523_125; GH523_138; GH523_160
11	Du_2005	GH527	genetic_marker	125\|175	GH527_125; GH527_175
12	Du_2005	NAU2265	genetic_marker	220\|240	NAU2265_220; NAU2265_240
13	Du_2005	NAU2277	genetic_marker	135\|145	NAU2277_135; NAU2277_145
14	Du_2005	TMB0564	genetic_marker	202	TMB0564_202
15	Du_2005	TMB0703	genetic_marker	250\|300	TMB0703_250; TMB0703_300
16	Du_2005	TMB0853	genetic_marker	250	TMB0853_250
17	Du_2005	TMB1125	genetic_marker	190\|245	TMB1125_190; TMB1125_245
18	Du_2005	TMB1348	genetic_marker	150	TMB1348_150
19	Du_2005	TMB1356	genetic_marker	200\|250	TMB1356_200; TMB1356_250
20	Du_2005	TMB1421	genetic_marker	190	TMB1421_190
21	Du_2005	TMB1578	genetic_marker	190	TMB1578_190
22	Du_2005	TMB1603	genetic_marker	215\|225\|250	TMB1603_215; TMB1603_225; TMB1603_250
23	Du_2005	TMB1701	genetic_marker	165	TMB1701_165
24	Du_2005	TMB2018	genetic_marker	233	TMB2018_233
25	Du_2005	BNL0409	genetic_marker	98	BNL0409_98

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Publications


Year	Publication
1979	Culp TW, Harrell DC. Registration of SC‐1 Cotton (Reg. No. 72). Crop Science. 1979; 19(3):410.

Snp Genotype Data

Total 63,056 records

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#	Dataset	Marker Name	Allele	Genotype
1	USDA_SNP63K_PD_genotype_2021	USDA_SNP0240	C/T	T
2	USDA_SNP63K_PD_genotype_2021	USDA_SNP0241	A/G	A
3	USDA_SNP63K_PD_genotype_2021	USDA_SNP0250	G/T	G
4	USDA_SNP63K_PD_genotype_2021	USDA_SNP0251	A/G	G
5	USDA_SNP63K_PD_genotype_2021	USDA_SNP0257	A/G	A
6	USDA_SNP63K_PD_genotype_2021	USDA_SNP0258	A/G	G
7	USDA_SNP63K_PD_genotype_2021	USDA_SNP0271	A/G	A
8	USDA_SNP63K_PD_genotype_2021	USDA_SNP0278	G/T	T
9	USDA_SNP63K_PD_genotype_2021	USDA_SNP0286	A/G	G
10	USDA_SNP63K_PD_genotype_2021	USDA_SNP0290	A/G	G
11	USDA_SNP63K_PD_genotype_2021	USDA_SNP0291	A/C	C
12	USDA_SNP63K_PD_genotype_2021	USDA_SNP0298	C/T	C
13	USDA_SNP63K_PD_genotype_2021	USDA_SNP0304	C/T	C
14	USDA_SNP63K_PD_genotype_2021	USDA_SNP0306	C/T	-
15	USDA_SNP63K_PD_genotype_2021	USDA_SNP0314	C/T	C
16	USDA_SNP63K_PD_genotype_2021	USDA_SNP0323	A/G	G
17	USDA_SNP63K_PD_genotype_2021	USDA_SNP0324	A/G	A
18	USDA_SNP63K_PD_genotype_2021	USDA_SNP0329	A/C	-
19	USDA_SNP63K_PD_genotype_2021	USDA_SNP0332	C/T	T
20	USDA_SNP63K_PD_genotype_2021	USDA_SNP0337	C/T	C
21	USDA_SNP63K_PD_genotype_2021	USDA_SNP0338	C/T	-
22	USDA_SNP63K_PD_genotype_2021	USDA_SNP0357	A/G	A
23	USDA_SNP63K_PD_genotype_2021	USDA_SNP0361	C/T	T
24	USDA_SNP63K_PD_genotype_2021	USDA_SNP0363	A/G	A
25	USDA_SNP63K_PD_genotype_2021	USDA_SNP0365	C/T	-

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Cross References

External references for this accession

In Collection

Name	ID used in Collection	External Database
Pedigrees of Upland and Pima Cultivars (v2005)	Pedigree-U510
NPGS Crop Science Registration (USA)	CV-72
GRIN NPGS Cotton Collection (USA)	PI 529598	GRIN:

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