SC-1

Germplasm Overview

Alias

Image


File Name	Legend	Dataset
SA-1544_CS13-0915_IMG_3085_BN.jpg	[SA-1544] boll showing nectaries, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3086_B.jpg	[SA-1544] green boll, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3087_B.jpg	[SA-1544] green boll, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3088_BO.jpg	[SA-1544] boll open, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7603_F.jpg	[SA-1544] flower, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7604_LB.jpg	[SA-1544] leaf close up of the back surface, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7605_FO.jpg	[SA-1544] flower open, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_MG_9160_L.jpg	[SA-1544] leaf, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)

Phenotypic Data

Total 37 trait scores

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#	Dataset	Descriptor	Value	Environment	Plot
1	NCGC germplasm evaluation, CS13	population homogeneity	uniform	US_TX_CS_2013	915
2	NCGC germplasm evaluation, CS13	seed fuzz grade	high	US_TX_CS_2013	915
3	NCGC germplasm evaluation, CS13	seed type	free	US_TX_CS_2013	915
4	NCGC germplasm evaluation, CS13	stem color	green	US_TX_CS_2013	915
5	NCGC germplasm evaluation, CS13	stem gossypol glands	medium	US_TX_CS_2013	915
6	NCGC germplasm evaluation, CS13	stigma exsertion	normal	US_TX_CS_2013	915
7	NCGC germplasm evaluation, CS13	trichome density on leaf	moderate	US_TX_CS_2013	915
8	NCGC germplasm evaluation, CS13	trichome density on stem	moderate	US_TX_CS_2013	915
9	NCGC germplasm evaluation, CS13	plant height (m)	0.76	US_TX_CS_2013	915
10	NCGC germplasm evaluation, CS13	leaf nectaries	one, main vein	US_TX_CS_2013	915
11	NCGC germplasm evaluation, CS13	plot plant stand	0.25	US_TX_CS_2013	915
12	NCGC germplasm evaluation, CS13	productiveness	25-36 per plant	US_TX_CS_2013	915

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Ssr Genotype Data

Total 101 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	Du_2005	TMB2018	genetic_marker	233	TMB2018_233

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Publications


Year	Publication
1979	Culp TW, Harrell DC. Registration of SC‐1 Cotton (Reg. No. 72). Crop Science. 1979; 19(3):410.

Snp Genotype Data

Total 63,056 records

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#	Dataset	Marker Name	Allele	Genotype
1	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000230	C/T	Y
2	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000232	G/A	A
3	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000238	A/C	C
4	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000248	T/C	C
5	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000249	A/G	G
6	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000250	G/A	R
7	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000273	A/G	A
8	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000275	T/C	C
9	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000276	A/C	C
10	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000287	G/T	T
11	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000296	A/C	C
12	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000302	C/T	Y
13	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000306	T/C	T
14	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000310	G/A	G
15	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000332	G/A	A
16	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000347	G/A	A
17	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000348	C/T	T
18	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000369	C/T	C
19	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000380	C/T	T
20	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000381	G/T	G
21	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000382	T/G	T
22	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000388	C/T	C
23	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000393	A/G	A
24	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000394	T/C	T
25	USDA_SNP63K_PD_genotype_2021	UCD_Gh_M_000395	T/C	T

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Cross References

External references for this accession

In Collection

Name	ID used in Collection	External Database
Pedigrees of Upland and Pima Cultivars (v2005)	Pedigree-U510
NPGS Crop Science Registration (USA)	CV-72
GRIN NPGS Cotton Collection (USA)	PI 529598	GRIN:

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