SC-1

Germplasm Overview

Alias

Image


File Name	Legend	Dataset
SA-1544_CS13-0915_IMG_3085_BN.jpg	[SA-1544] boll showing nectaries, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3086_B.jpg	[SA-1544] green boll, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3087_B.jpg	[SA-1544] green boll, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3088_BO.jpg	[SA-1544] boll open, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7603_F.jpg	[SA-1544] flower, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7604_LB.jpg	[SA-1544] leaf close up of the back surface, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7605_FO.jpg	[SA-1544] flower open, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_MG_9160_L.jpg	[SA-1544] leaf, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)

Phenotypic Data

Total 37 trait scores

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#	Dataset	Descriptor	Value	Environment	Plot
1	NCGC germplasm evaluation, CS13	population homogeneity	uniform	US_TX_CS_2013	915
2	NCGC germplasm evaluation, CS13	seed fuzz grade	high	US_TX_CS_2013	915
3	NCGC germplasm evaluation, CS13	seed type	free	US_TX_CS_2013	915
4	NCGC germplasm evaluation, CS13	stem color	green	US_TX_CS_2013	915
5	NCGC germplasm evaluation, CS13	stem gossypol glands	medium	US_TX_CS_2013	915
6	NCGC germplasm evaluation, CS13	stigma exsertion	normal	US_TX_CS_2013	915
7	NCGC germplasm evaluation, CS13	trichome density on leaf	moderate	US_TX_CS_2013	915
8	NCGC germplasm evaluation, CS13	trichome density on stem	moderate	US_TX_CS_2013	915
9	NCGC germplasm evaluation, CS13	plant height (m)	0.76	US_TX_CS_2013	915
10	NCGC germplasm evaluation, CS13	leaf nectaries	one, main vein	US_TX_CS_2013	915
11	NCGC germplasm evaluation, CS13	plot plant stand	0.25	US_TX_CS_2013	915
12	NCGC germplasm evaluation, CS13	productiveness	25-36 per plant	US_TX_CS_2013	915

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Ssr Genotype Data

Total 101 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	Du_2005	CIR0228	genetic_marker	218	CIR0228_218
2	Du_2005	GH325	genetic_marker	110\|135	GH325_110; GH325_135
3	Du_2005	GH329	genetic_marker	168	GH329_168
4	Du_2005	GH350	genetic_marker	155\|175\|88	GH350_155; GH350_175; GH350_88
5	Du_2005	GH422	genetic_marker	120	GH422_120
6	Du_2005	GH443	genetic_marker	150	GH443_150
7	Du_2005	GH447	genetic_marker	99	GH447_99
8	Du_2005	GH458	genetic_marker	85\|88	GH458_85; GH458_88
9	Du_2005	GH484	genetic_marker	138	GH484_138
10	Du_2005	GH486	genetic_marker	120	GH486_120
11	Du_2005	GH532	genetic_marker	180	GH532_180
12	Du_2005	GH539	genetic_marker	97	GH539_97
13	Du_2005	NAU2397	genetic_marker	165\|190\|210	NAU2397_165; NAU2397_190; NAU2397_210
14	Du_2005	NAU2503	genetic_marker	210	NAU2503_210
15	Du_2005	TMB0564	genetic_marker	202	TMB0564_202
16	Du_2005	TMB0703	genetic_marker	250\|300	TMB0703_250; TMB0703_300
17	Du_2005	TMB1181	genetic_marker	210	TMB1181_210
18	Du_2005	TMB1224	genetic_marker	195\|225	TMB1224_195; TMB1224_225
19	Du_2005	TMB1288	genetic_marker	120	TMB1288_120
20	Du_2005	TMB1348	genetic_marker	150	TMB1348_150
21	Du_2005	TMB1356	genetic_marker	200\|250	TMB1356_200; TMB1356_250
22	Du_2005	TMB1421	genetic_marker	190	TMB1421_190
23	Du_2005	TMB1578	genetic_marker	190	TMB1578_190
24	Du_2005	TMB1603	genetic_marker	215\|225\|250	TMB1603_215; TMB1603_225; TMB1603_250
25	Du_2005	TMB1701	genetic_marker	165	TMB1701_165

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Publications


Year	Publication
1979	Culp TW, Harrell DC. Registration of SC‐1 Cotton (Reg. No. 72). Crop Science. 1979; 19(3):410.

Snp Genotype Data

Total 63,056 records

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#	Dataset	Marker Name	Allele	Genotype
1	USDA_SNP63K_PD_genotype_2021	USDA_SNP0368	A/C	A
2	USDA_SNP63K_PD_genotype_2021	USDA_SNP0370	A/C	-
3	USDA_SNP63K_PD_genotype_2021	USDA_SNP0377	A/G	G
4	USDA_SNP63K_PD_genotype_2021	USDA_SNP0379	A/G	A
5	USDA_SNP63K_PD_genotype_2021	USDA_SNP0382	A/G	A
6	USDA_SNP63K_PD_genotype_2021	USDA_SNP0385	A/C	C
7	USDA_SNP63K_PD_genotype_2021	USDA_SNP0388	A/G	G
8	USDA_SNP63K_PD_genotype_2021	USDA_SNP0390	C/T	-
9	USDA_SNP63K_PD_genotype_2021	USDA_SNP0391	A/G	G
10	USDA_SNP63K_PD_genotype_2021	USDA_SNP0403	C/T	T
11	USDA_SNP63K_PD_genotype_2021	USDA_SNP0405	C/T	Y
12	USDA_SNP63K_PD_genotype_2021	USDA_SNP0406	A/G	G
13	USDA_SNP63K_PD_genotype_2021	USDA_SNP0407	A/C	A
14	USDA_SNP63K_PD_genotype_2021	USDA_SNP0413	G/T	T
15	USDA_SNP63K_PD_genotype_2021	USDA_SNP0416	C/T	T
16	USDA_SNP63K_PD_genotype_2021	USDA_SNP0418	A/G	G
17	USDA_SNP63K_PD_genotype_2021	USDA_SNP0419	C/T	-
18	USDA_SNP63K_PD_genotype_2021	USDA_SNP0426	A/G	G
19	USDA_SNP63K_PD_genotype_2021	USDA_SNP0432	A/G	A
20	USDA_SNP63K_PD_genotype_2021	USDA_SNP0445	A/G	G
21	USDA_SNP63K_PD_genotype_2021	USDA_SNP0446	A/C	-
22	USDA_SNP63K_PD_genotype_2021	USDA_SNP0451	A/G	-
23	USDA_SNP63K_PD_genotype_2021	USDA_SNP0453	A/C	C
24	USDA_SNP63K_PD_genotype_2021	USDA_SNP0459	C/T	T
25	USDA_SNP63K_PD_genotype_2021	USDA_SNP0460	A/C	A

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Cross References

External references for this accession

In Collection

Name	ID used in Collection	External Database
Pedigrees of Upland and Pima Cultivars (v2005)	Pedigree-U510
NPGS Crop Science Registration (USA)	CV-72
GRIN NPGS Cotton Collection (USA)	PI 529598	GRIN:

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