Gh350, Gh350 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh350
Genbank IDDQ908289
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908289
Source Typegenomic
Repeat MotifAGA(22)
Primer 1Gh350_F: CAATCTGCATGTGCCAATACACTG
Primer 2Gh350_R: TCACTCCATGTTACAGTTGAGGAC
PolymorphismP_ Gh350
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:12083041..12083189 +
D5_01chromosomeD5_01:11670129..11670314 +
Dt_chr2chromosomeDt_chr2:43333022..43333143 -
D01chromosomeD01:11322274..11322428 +
Ghir_D01chromosomeGhir_D01:12643852..12643997 +
D01chromosomeD01:12383765..12383913 +
D01chromosomeD01:12174600..12174742 +
D01chromosomeD01:12534703..12534851 +
D01chromosomeD01:12853423..12853571 +
Chr01chromosomeChr01:11551351..11551511 +
Chr02chromosomeGh350:1..640 .
Chr02:13520382..13521040 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908289DQ908289Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A23.72Gh350bView
2TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch26_Dt.12N/A63.9Gh350bView
3TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A48.96Gh350aView
4Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A83.14Gh350aView
5TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A70.9Gh350aView
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch15_Dt.01N/A47.7Gh350aView
7(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch15_Dt.01N/A116.9Gh350View
8Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A47Gh350View
9Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A71.2Gh350View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A47.73Gh350View
11TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A70.93GH350aView
12TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A70.3Gh350-50View
Sequence
>Gh350 ID=Gh350; Name=Gh350; organism=Gossypium hirsutum; type=genetic_marker; length=150bp
CAATCTGCATGTGCCAATACACTGGAAGAAGAATAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AATAAGAAGAAGAAGAAGAAGAAGAAGTCCTCAACTGTAACATGGAGTGA