USDA_SNP0390, USDA_SNP0390 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0390
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00091Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:17025871..17025871 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:17087524..17087586 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:17179275..17179337 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:44524356..44524417 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:40366350..40366412 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4099_D06supercontigscaffold4099_D06:119755..119817 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:18019438..18019500 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:17519443..17519505 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:17990900..17990962 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:17516318..17516380 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:17263326..17263388 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:16991744..16991806 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:17790773..17790835 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:17457129..17457191 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:17281512..17281574 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:18175684..18175746 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:16988656..16988718 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:17823044..17823105 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:14706662..14706723 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr10chromosomeChr10:18325723..18325784 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:12957200..12957262 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>USDA_SNP0390 ID=USDA_SNP0390; Name=USDA_SNP0390; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTTCAA[C/T]CGTTGAGAAAGTCAAACCATTCTCGTTTTCCAAC
CCTGTCGAATTGTTCAA