SC-1

Germplasm Overview

Alias

Image


File Name	Legend	Dataset
SA-1544_CS13-0915_IMG_3085_BN.jpg	[SA-1544] boll showing nectaries, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3086_B.jpg	[SA-1544] green boll, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3087_B.jpg	[SA-1544] green boll, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_3088_BO.jpg	[SA-1544] boll open, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7603_F.jpg	[SA-1544] flower, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7604_LB.jpg	[SA-1544] leaf close up of the back surface, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_IMG_7605_FO.jpg	[SA-1544] flower open, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)
SA-1544_CS13-0915_MG_9160_L.jpg	[SA-1544] leaf, College Station Plot-0915, 2013	NCGC digital imaging (College Station, 2013)

Phenotypic Data

Total 37 trait scores

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#	Dataset	Descriptor	Value	Environment	Plot
1	NCGC germplasm evaluation, CS13	population homogeneity	uniform	US_TX_CS_2013	915
2	NCGC germplasm evaluation, CS13	seed fuzz grade	high	US_TX_CS_2013	915
3	NCGC germplasm evaluation, CS13	seed type	free	US_TX_CS_2013	915
4	NCGC germplasm evaluation, CS13	stem color	green	US_TX_CS_2013	915
5	NCGC germplasm evaluation, CS13	stem gossypol glands	medium	US_TX_CS_2013	915
6	NCGC germplasm evaluation, CS13	stigma exsertion	normal	US_TX_CS_2013	915
7	NCGC germplasm evaluation, CS13	trichome density on leaf	moderate	US_TX_CS_2013	915
8	NCGC germplasm evaluation, CS13	trichome density on stem	moderate	US_TX_CS_2013	915
9	NCGC germplasm evaluation, CS13	plant height (m)	0.76	US_TX_CS_2013	915
10	NCGC germplasm evaluation, CS13	leaf nectaries	one, main vein	US_TX_CS_2013	915
11	NCGC germplasm evaluation, CS13	plot plant stand	0.25	US_TX_CS_2013	915
12	NCGC germplasm evaluation, CS13	productiveness	25-36 per plant	US_TX_CS_2013	915

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Ssr Genotype Data

Total 101 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	Du_2005	TMB0426	genetic_marker	170\|200	TMB0426_170; TMB0426_200
2	Du_2005	TMB0436	genetic_marker	200	TMB0436_200
3	Du_2005	TMB0853	genetic_marker	250	TMB0853_250
4	Du_2005	TMB1125	genetic_marker	190\|245	TMB1125_190; TMB1125_245
5	Du_2005	TMB1348	genetic_marker	150	TMB1348_150
6	Du_2005	TMB1356	genetic_marker	200\|250	TMB1356_200; TMB1356_250
7	Du_2005	TMB1421	genetic_marker	190	TMB1421_190
8	Du_2005	TMB1578	genetic_marker	190	TMB1578_190
9	Du_2005	TMB1603	genetic_marker	215\|225\|250	TMB1603_215; TMB1603_225; TMB1603_250
10	Du_2005	TMB1701	genetic_marker	165	TMB1701_165
11	Du_2005	TMB2018	genetic_marker	233	TMB2018_233
12	Du_2005	BNL0169	genetic_marker	196	BNL0169_196
13	Du_2005	BNL0840	genetic_marker	157	BNL0840_157
14	Du_2005	BNL1034	genetic_marker	230\|250	BNL1034_230; BNL1034_250
15	Du_2005	BNL1047	genetic_marker	260\|280	BNL1047_260; BNL1047_280
16	Du_2005	BNL1317	genetic_marker	175\|191	BNL1317_175; BNL1317_191
17	Du_2005	BNL1350	genetic_marker	196	BNL1350_196
18	Du_2005	BNL3441	genetic_marker	210	BNL3441_210
19	Du_2005	CIR0009	genetic_marker	222\|226	CIR0009_222; CIR0009_226
20	Du_2005	CIR0026	genetic_marker	106	CIR0026_106
21	Du_2005	CIR0048	genetic_marker	125	CIR0048_125
22	Du_2005	CIR0068	genetic_marker	158	CIR0068_158
23	Du_2005	CIR0229	genetic_marker	296\|322	CIR0229_296; CIR0229_322
24	Du_2005	GH288	genetic_marker	140\|175	GH288_140; GH288_175
25	Du_2005	GH302	genetic_marker	280	GH302_280

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Publications


Year	Publication
1979	Culp TW, Harrell DC. Registration of SC‐1 Cotton (Reg. No. 72). Crop Science. 1979; 19(3):410.

Snp Genotype Data

Total 63,056 records

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#	Dataset	Marker Name	Allele	Genotype
1	USDA_SNP63K_PD_genotype_2021	USDA_SNP0136	G/T	T
2	USDA_SNP63K_PD_genotype_2021	USDA_SNP0143	C/T	T
3	USDA_SNP63K_PD_genotype_2021	USDA_SNP0149	C/T	T
4	USDA_SNP63K_PD_genotype_2021	USDA_SNP0160	G/T	T
5	USDA_SNP63K_PD_genotype_2021	USDA_SNP0162	C/T	T
6	USDA_SNP63K_PD_genotype_2021	USDA_SNP0172	G/A	A
7	USDA_SNP63K_PD_genotype_2021	USDA_SNP0183	C/T	-
8	USDA_SNP63K_PD_genotype_2021	USDA_SNP0186	A/C	A
9	USDA_SNP63K_PD_genotype_2021	USDA_SNP0188	C/T	C
10	USDA_SNP63K_PD_genotype_2021	USDA_SNP0189	A/G	-
11	USDA_SNP63K_PD_genotype_2021	USDA_SNP0194	A/G	G
12	USDA_SNP63K_PD_genotype_2021	USDA_SNP0197	C/T	T
13	USDA_SNP63K_PD_genotype_2021	USDA_SNP0202	A/G	G
14	USDA_SNP63K_PD_genotype_2021	USDA_SNP0203	C/T	Y
15	USDA_SNP63K_PD_genotype_2021	USDA_SNP0209	C/T	T
16	USDA_SNP63K_PD_genotype_2021	USDA_SNP0218	A/C	-
17	USDA_SNP63K_PD_genotype_2021	USDA_SNP0220	A/C	C
18	USDA_SNP63K_PD_genotype_2021	USDA_SNP0223	A/G	A
19	USDA_SNP63K_PD_genotype_2021	USDA_SNP0224	C/T	T
20	USDA_SNP63K_PD_genotype_2021	USDA_SNP0226	A/C	A
21	USDA_SNP63K_PD_genotype_2021	USDA_SNP0227	C/T	-
22	USDA_SNP63K_PD_genotype_2021	USDA_SNP0230	C/T	C
23	USDA_SNP63K_PD_genotype_2021	USDA_SNP0236	A/G	A
24	USDA_SNP63K_PD_genotype_2021	USDA_SNP0237	A/G	G
25	USDA_SNP63K_PD_genotype_2021	USDA_SNP0238	G/T	T

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Cross References

External references for this accession

In Collection

Name	ID used in Collection	External Database
Pedigrees of Upland and Pima Cultivars (v2005)	Pedigree-U510
NPGS Crop Science Registration (USA)	CV-72
GRIN NPGS Cotton Collection (USA)	PI 529598	GRIN:

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