TMB0436, TMB0436 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	TMB0436
Alias	TMG10
Genbank ID	BV679888
Type	SSR
Species	Gossypium hirsutum
Germplasm	TM-1
Source Sequence	reverse_complement_BV679888.1
Source Type	genomic
Repeat Motif	(GA)5+(GA)17+(GAA)4
PCR Condition	Annealing temperature: 55
Primer 1	TMB0436_F: TGTGGCACAACCTTCCAAT
Primer 2	TMB0436_R: CGTGTTCTCCATTTGATTCAT
Product Length	189
Polymorphism	P_ TMB0436
Contact	Yu, John Z. (Zhi-Hong)
Comment	Primer data obtained in 2005-10

Contact

Name

Details

Yu, John Z. (Zhi-Hong)

Description:	Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:	John
Last name:	Yu
Title:	Research Geneticist
Institution:	USDA-ARS
Address:	2765 F&B Road, College Station, Texas 77845
Country:	United States
Email:	zyu@qutun.tamu.edu
Phone:	1-979-260-9237
Fax:	1-979-260-9333
Keywords:	Cotton Molecular Genetics
Last update:	6-Sep-2007

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	BV679888

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D06	chromosome	D06:37903312..37903498 +
CM018220.1	chromosome	CM018220.1:34871186..34871355 +
D5_06	chromosome	D5_06:33383794..33383962 +
Chr06_CRI-A2_v1.0.a1	chromosome	Chr06_CRI-A2_v1.0.a1:71239095..71239276 +
Dt_chr10	chromosome	Dt_chr10:54822967..54823161 +
At_chr11	chromosome	At_chr11:36690771..36690957 -
D06	chromosome	D06:35529582..35529770 +
Ghir_D06	chromosome	Ghir_D06:37826915..37827103 +
Ghir_A06	chromosome	Ghir_A06:51047321..51047524 -
D06	chromosome	D06:37380459..37380647 +
A06	chromosome	A06:50147995..50148203 -
D06	chromosome	D06:37288584..37288772 +
D06	chromosome	D06:34591874..34592066 +
A06	chromosome	A06:49580942..49581154 -
scaffold7378	supercontig	scaffold7378:79524..79693 -
Gbar_D06	chromosome	Gbar_D06:37081852..37082021 -
D06	chromosome	D06:35267101..35267270 +
CM017628.1	chromosome	CM017628.1:35826240..35826409 +
CM017654.1	chromosome	CM017654.1:36592016..36592179 +
CM017706.1	chromosome	CM017706.1:35538978..35539147 +
D06	chromosome	D06:37644836..37645024 +
Chr06	chromosome	Chr06:72525000..72525181 +
Chr06	chromosome	Chr06:33244880..33245048 +
Chr10	chromosome	Chr10:36781795..36781961 +
Chr10	chromosome	Chr10:24290548..24290707 +

Germplasm


Stock Name	Type
TM-1	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
reverse_complement_BV679888.1	reverse_complement_BV679888.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	CCRI-36 x Hai-7124, F2 (2007)	AD_ch06_At.06	N/A	74.1	TMG10a	View
2	CCRI-36 x Hai-7124, F2 (2007)	AD_ch25_Dt.06	N/A	85.4	TMG10b	View
3	Deltapine-61 x Texas-701, F2 (2007)	AD_ch25_Dt.06	N/A	26.9	TMB0436-157	View
4	Handan-208 x Pima-90, F2:3 (2007)	AD_ch25_Dt.06	N/A	292.6	TMHG10	View
5	AD-genome wide Reference Map (2009)	AD_ch25_Dt.06	N/A	72	TMB0436	View
6	AD-genome wide Reference Map (2009)	AD_ch06_At.06	N/A	170	TMB0436	View
7	Yumian-1 x T586, F2:7 (2008)	AD_ch25_Dt.06	N/A	0	TMB0436	View
8	Yumian-1 x T586, RIL (2006)	AD_ch25_Dt.06	N/A	7	TMB0436	View
9	DH962 x Jinmian-6, F2 (2009)	AD_ch25_Dt.06	N/A	45.2	TMB0436	View
10	DH962 x Jinmian-6, F2 (2009)	AD_ch25_Dt.06	N/A	45.2	TMB0436	View
11	Yumian-1 x T586, RIL (2015)	AD_ch25_Dt.06	N/A	52.5	TMB0436	View
12	DH962 X Ji Mian 5, F2 (2015)	AD_ch25_Dt.06	N/A	68.03	TMB0436	View
13	DH962 x Ji Mian 5, RIL (2015)	AD_ch25_Dt.06	N/A	36.3	TMB0436	View
14	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch25_Dt.06	N/A	39.7	TMB0436	View
15	TM-1 x 3-79, RIL (2012)	AD_ch06_At.06	N/A	55.9	TMB0436b	View
16	TM-1 x 3-79, RIL (2014)	AD_ch06_At.06	N/A	55.9	TMB0436b	View
17	TM-1 x 3-79, RIL (2012)	AD_ch25_Dt.06	N/A	56.05	TMB0436a	View
18	TM-1 x 3-79, RIL (2014)	AD_ch25_Dt.06	N/A	52.2	TMB0436a	View
19	TM-1 x Hai-7124, BC1 (2007)	AD_ch25_Dt.06	N/A	96.1	TMG10-175	View
20	TM-1 x Hai-7124, BC1 (2008)	AD_ch25_Dt.06	N/A	45.4	TMG10-175	View
21	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch25_Dt.06	N/A	151.6	TMG10-175	View
22	TM-1 x Hai-7124, BC1 (2012)	AD_ch25_Dt.06	N/A	55.9	TMG10-175	View
23	Vsg x (TM-1 x Hai-7124), DH (2005)	AD_ch25_Dt.06	N/A	140.4	TMG10-195	View
24	Zhongmiansuo-12 x 8891, RIL (2007)	AD_ch25_Dt.06	N/A	9.5	TMG10	View
25	Yumian-1 x T586, RIL (2009)	AD_ch25_Dt.06	N/A	7.1	TMB0436/180t(C25)	View
26	TM-1 x 3-79, RIL (2012.v3)	AD_ch06_At.06	N/A	55.9	TMB0436b	View
27	TM-1 x 3-79, RIL (2012.v3)	AD_ch25_Dt.06	N/A	52.15	TMB0436a	View

Sequence

>TMB0436 ID=TMB0436; Name=TMB0436; organism=Gossypium hirsutum; type=genetic_marker; length=189bp
TGTGGCACAACCTTCCAATGAATGAATCTTTTGAACACCCCCAAACTTAT
TTTGAACTCATGCTAAACAATTTTTTTTCAAAATTTGAGCAAAATTTTCT
TTGCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
ACTCTCTCTCTCTGTTTCATGAATCAAATGGAGAACACG

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TMB0436, TMB0436 (genetic_marker) Gossypium hirsutum