USDA_SNP0162, USDA_SNP0162 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0162
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00033Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr06chromosomeChr06:48961365..48961365 .
CM018223.1chromosomeCM018223.1:48312958..48313020 +
CM018210.1chromosomeCM018210.1:74586026..74586088 +
D5_09chromosomeD5_09:41610037..41610099 +
KI_09chromosomeKI_09:36905213..36905275 +
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:82503615..82503677 +
D10_09chromosomeD10_09:2262479..2262542 -
CM016622.1chromosomeCM016622.1:3276902..3276964 -
scaffold288.1supercontigscaffold288.1:316992..317054 +
scaffold251.1supercontigscaffold251.1:469980..470042 -
D09chromosomeD09:48543570..48543632 +
A09chromosomeA09:72432675..72432737 +
Ghir_D09chromosomeGhir_D09:50536577..50536639 +
Ghir_A09chromosomeGhir_A09:79567923..79567985 +
D09chromosomeD09:49826199..49826261 +
A09chromosomeA09:80806619..80806681 +
D09chromosomeD09:50284827..50284889 +
A09chromosomeA09:81012804..81012866 +
D09chromosomeD09:48379169..48379231 +
A09chromosomeA09:77582623..77582685 +
Gbar_D09chromosomeGbar_D09:49185476..49185538 +
Gbar_A09chromosomeGbar_A09:75414602..75414664 +
D09chromosomeD09:51559992..51560054 +
A09chromosomeA09:76836322..76836384 +
CM017631.1chromosomeCM017631.1:49281106..49281168 +
CM017618.1chromosomeCM017618.1:76773069..76773131 +
CM017657.1chromosomeCM017657.1:50822777..50822839 +
CM017644.1chromosomeCM017644.1:80115554..80115616 +
CM017709.1chromosomeCM017709.1:49988295..49988357 +
CM017696.1chromosomeCM017696.1:76919978..76920040 +
D09chromosomeD09:52145490..52145552 +
A09chromosomeA09:82827427..82827489 +
Chr09chromosomeChr09:81914765..81914827 +
Chr09chromosomeChr09:84632370..84632432 +
Chr09chromosomeChr09:47834380..47834442 +
B_09chromosomeB_09:68195096..68195159 +
Chr06chromosomeChr06:48649565..48649627 +
chr06chromosomechr06:40453933..40453995 +
Chr_06chromosomeChr_06:34067925..34067987 +
Chr06chromosomeChr06:49756594..49756656 +
Chr06chromosomeChr06:28578481..28578543 +
Chr06chromosomeChr06:35007039..35007101 +
E09chromosomeE09:2938709..2938771 -
F09chromosomeF09:68497395..68497457 +
Sequence
>USDA_SNP0162 ID=USDA_SNP0162; Name=USDA_SNP0162; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTTAAGTTACTCGAACTAAATGAGAAAGAAACAGTAACTCAACAAA
GA[C/T]GATTATATTA