USDA_SNP0419, USDA_SNP0419 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0419
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00100Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06chromosomeChr06:44568423..44568423 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018223.1chromosomeCM018223.1:43741689..43741751 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:69764829..69764891 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:37225587..37225649 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:76375982..76376044 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:6454067..6454129 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold845.1supercontigscaffold845.1:169080..169142 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:6674644..6674706 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:43822765..43822827 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:68810298..68810360 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:45773362..45773424 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:74106435..74106497 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:45231756..45231818 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:75671018..75671080 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:45530077..45530139 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:75877794..75877856 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:43612623..43612685 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:72514326..72514388 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:44381710..44381772 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:70294594..70294656 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:46851473..46851535 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:71708248..71708310 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:44618972..44619034 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:71632681..71632743 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:46004403..46004465 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:74562533..74562595 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:45274804..45274866 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:71796172..71796234 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:47239034..47239096 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:77364619..77364681 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:77345537..77345599 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:76423272..76423334 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:79269871..79269933 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:43442948..43443010 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:63027993..63028055 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:44006319..44006381 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:36361697..36361759 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:30451051..30451113 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:45203457..45203519 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:33554909..33554971 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:25350101..25350163 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:31083355..31083417 +Gossypium lobatum (D7) genome ISU_v1n/a
F09chromosomeF09:63951511..63951573 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:123147471..123147533 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0419 ID=USDA_SNP0419; Name=USDA_SNP0419; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTCCG[C/T]CTTGCTGTGTGGGTGCCTTTTAGGGATCTAAAAGTG
GCTGTGATATGGGGAAA