TMB1288, TMB1288 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB1288
AliasTMH B26-C4
Genbank IDBV679929
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source Sequencereverse_complement_BV679929.1
Source Typegenomic
Repeat Motif(CA)40
PCR ConditionAnnealing temperature: 55
Primer 1TMB1288_F: TCTTTGGCGGATACCTTCAC
Primer 2TMB1288_R: TAAAGCCAACCAATAAGATAAGT
Product Length165
PolymorphismP_ TMB1288
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Germplasm
Stock NameType
TM-1breeding_germplasm
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679929
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
TMB1288_FTMB1288_FGossypium hirsutumprimer
TMB1288_RTMB1288_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber elongationqFEL.9s-F2.ch10.ay14Gossypium hirsutumQTL
fiber lengthqFL.9s-F2.ch10.ay13Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
TMHB26TMHB26Gossypium hirsutummarker_locus
TMB1288-119TMB1288-119Gossypium hirsutummarker_locus
tmb1288tmb1288Gossypium hirsutummarker_locus
TMB1288/130tTMB1288/130tGossypium hirsutummarker_locus
TMB1288TMB1288-80.351Gossypium hirsutummarker_locus
TMB1288aTMB1288aGossypium hirsutummarker_locus
TMB1288bTMB1288bGossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
reverse_complement_BV679929.1reverse_complement_BV679929.1Gossypium hirsutumsequence_feature


Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Sequence
>TMB1288 ID=TMB1288|Name=TMB1288|organism=Gossypium hirsutum|type=genetic_marker|length=165bp
TCTTTGGCGGATACCTTCACATCGTCAGACACACACACACACACACACAC
ACACACACACACACACTACACACACTACTACTACTACACATAGTATAGTA
CTCTATGTGCTACTTACTCTATACTTAATGAATCATCTCTTAACTTATCT
TATTGGTTGGCTTTA
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr10N/AAD_chr.1021.8TMHB26View
2Deltapine-61 x Texas-701, F2 (2007)Deltapine-61 x Texas-701, F2 (2007).DT-F2_chr.10N/AAD_chr.1022.2TMB1288-119View
3AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr10N/AAD_chr.1036tmb1288View
4TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c10N/AAD_chr.1075.73tmb1288View
5Yumian-1 x T586, RIL (2006)YT-RIL_chr10-2N/AAD_chr.1078.8tmb1288View
6Yumian-1 x T586, RIL (2015)YT-RIL.15_chr10N/AAD_chr.1062.4tmb1288View
7TM-1 x 3-79, RIL (2014)T3-RIL.14_chr10N/AAD_chr.1080.4tmb1288View
8CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr10N/AAt.1098.5tmb1288View
9Yumian-1 x T586, RIL (2009)YT-RIL_chr10-1N/AAD_chr.1078.8TMB1288/130tView
10TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.10N/AAD_chr.1080.35TMB1288View
11901-001 x sGK156, F2 (2019)Chr10N/AAD_chr.1013.51TMB1288aView
12901-001 x sGK156, F2 (2019)Chr10N/AAD_chr.1016.77TMB1288bView