cdbgm_005409.0, TM-1 (TBD) Gossypium hirsutum

Germplasm Overview
NameTM-1
Aliasacc. TM-1 [view all 10]
GRIN ID
TypeBreeding Germplasm
SpeciesGossypium hirsutum
DescriptionN/A
Origin CountryN/A
Origin DetailN/A
PedigreeN/A
Maternal ParentN/A
Paternal ParentN/A
Maternal Parent ofTM-1 x 3-79, F2 [view all 109]
Paternal Parent of7235 x TM-1, RIL [view all 10]
Phenotypic Data[view all 71]
Genotypic DataN/A
Map[view all 21]
DNA Library[view all 13 ]
Sequence[view all 28566 ]
CommentsN/A
ReferenceMasonbrink RE, Gallagher JP, Jareczek JJ, Renny-Byfield S, Grover CE, Gong L, Wendel JF. CenH3 evolution in diploids and polyploids of three angiosperm genera. BMC Plant Biol. 2014 Dec 30;14:383. doi: 10.1186/s12870-014-0383-3.
Alias
Synonym
acc. TM-1
Accession 'TM-1'
Texas Maker-1 (TM-1)
Texas Marker 1
Texas Marker1
Texas Marker-1
Texas-marker 1 (TM1)
TM 1
TM1
ISC451819
Publications
YearPublication
2014Masonbrink RE, Gallagher JP, Jareczek JJ, Renny-Byfield S, Grover CE, Gong L, Wendel JF. CenH3 evolution in diploids and polyploids of three angiosperm genera. BMC Plant Biol. 2014 Dec 30;14:383. doi: 10.1186/s12870-014-0383-3.
Maternal Parent Of
Germplasm Name Description Type
TM-1 x 3-79, F2phenotype data used in T#-RIL QTL analysispopulation
TM-1 x 3-79, RILgenetic mappingpopulation
TM-1 x Hai-7124, BC1genetic mappingpopulation
TM-1 x NM24016, RIL

genetic mapping

population
TM-1 x WT-936, F2genetic mappingpopulation
TM-1 x Hai-7124, F2genetic mappingpopulation
TN-RIL-03recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-06recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-08recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-09recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-11recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-12recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-13recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-20recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-22recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-24recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-27recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-28recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-35recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-37recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-38recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-41recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-43recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-46recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-47recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-53recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-58recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-73recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-79recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-83recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-87recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-88recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-92recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-94recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-95recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
TN-RIL-96recombinant inbred line (RIL) of TM-1 x NM24016breeding_germplasm
T3-RIL-014recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-015recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-020recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-029recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-030recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-034recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-036recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-037recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-046recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-047recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-049recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-050recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-051recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-053recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-054recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-055recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-058recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-059recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-066recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-077recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-078recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-081recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-086recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-091recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-094recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-096recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-100recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-101recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-107recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-108recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-110recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-117recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-119recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-123recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-125recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-127recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-129recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-132recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-137recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-138recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-141recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-142recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-143recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-144recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-145recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-147recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-148recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-152recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-153recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-154recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-158recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-160recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-163recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-164recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-168recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-175recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-180recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-181recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-182recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
T3-RIL-183recombinant inbred line (RIL) of TM-1 x 3-79breeding_germplasm
TM-1 x Hai-1, F2population
H18 x TM-1, F2population
TM-1 x Hai-7124, BC1S1population
TN-RIL-54breeding_germplasm
TN-RIL-26breeding_germplasm
TN-RIL-59breeding_germplasm
TN-RIL-14breeding_germplasm
TM-1 x Hai-7124, CSILpopulation
TM-1 x TX-0256, CSILpopulation
TM-1 x TX-1046, CSILpopulation
TM-1 x (TX-0256 + TX-1046), CSILpopulation
TM-1 x Li1, F2population
TM-1 x im, F2population
Library
Name Details
Gossypium hirsutum 24 days postanthesis secondary-stage fibers
Tissue Type : seed epidermal cells
Developmental Stage : 24 days postanthesis secondary-stage fibers
pGH
Vector Type : plasmid
Vector : pUC(019)
Cloning Site : 1: Pst1
Tissue Type : Leaves
Pst1-M fragment
Vector Type : BAC; plasmid
Vector : pUC(019)
Cloning Site : 1: Pst1
Tissue Type : Leaves
Host : DH5-alpha
Pst1-P fragment
Vector Type : BAC; plasmid
Vector : pUC(019)
Cloning Site : 1: Pst1
Tissue Type : Leaves
Host : DH5-alpha
cotton fiber suppression subtractive hybridization Library
Tissue Type : fiber
Developmental Stage : 10 and 20 days post anthesis (dpa)
Gossypium hirsutum cv. TM-1 embryoid one month after subculture
Tissue Type : embryoid
Developmental Stage : one month after subculture
GH_TMO
Vector Type : plasmid
Vector : pCMV-SPORT6.1
Cloning Site : 1: EcoRI; 2: NotI
Tissue Type : Immature ovules
Developmental Stage : Immature ovules (-3 to 3 days post anthesis, DPA) with or without fibers
Comments :
Gossypium hirsutum cv. TM-1 embryoid callus
Tissue Type : embryoid callus
Comments : note=genotype: AD
Cotton fiber suppression subtractive hybridization cDNA library
Tissue Type : fiber
Developmental Stage : 9 days post anthesis (dpa)
Comments : The library was constructed using PCR-select cDNA subtraction method with 9 dpa cotton fiber as tester and leaf as driver
BAC and BIBAC libraries from Upland cotton genetic standard TM-1
Vector Type : BAC; plasmid
Vector : pCLD04541; pBeloBAC11
Tissue Type : young leaves
Host : DH10B
Comments : For more details on library construction, ordering clones and sequence analysis see http://algodon.tamu.edu/htdocs-cotton/cottondb.html
Plasmid, BAC and BIBAC libraries from upland cotton genetic standard TM-1
Vector Type : plasmid
Vector : pCLD04541; pBeloBAC11; pGEM11
Cloning Site : 1: BamHI; HindIII; EcoRI
Tissue Type : young leaves
Comments : For more details on library construction, ordering clones and sequence analysis see http://algodon.tamu.edu/htdocs-cotton/cottondb.html
Upland cotton TM-1
Vector Type : BAC; plasmid
Vector : 1:pCLD04541; 2:pBeloBAC11; 3:pGEM11
Tissue Type : young leaves
Comments : microsatellite oligos were used as probes to screen the BAC and BIBAC cotton libraries, those positive clones were subcloned and hybridized again with oligos. positive sub clones were sequenced and SSR primers were designed from those sequences
Gossypium hirsutum BIBAC Library
Vector : pCLD04541
Paternal Parent Of
Germplasm Name Description Type
7235 x TM-1, RILgenetic mappingpopulation
3-79 x TM-1, F2population
7235 x TM-1, F2population
7235 x TM-1, F2:3population
HS427-10 x TM-1, F2population
HS427-10 x TM-1, F2:3population
H18 x TM-1, F2population
Baimian 1 x TM-1 , F2:3population
IL138-A11-3 x TM-1, F2:3population
W10 x TM-1, F2:3population
Phenotypic Data
Phenotypic Data
Total 71 trait scores
Download Table
# Dataset Descriptor Value Environment Replication Plot
1BT-F2:3-2014LP (%)30.71CN_HN_HIST_2010
2BT-F2:3-2014LP (%)31.28CN_HN_HIST_2011
3ILTM-F2:3-2014BN per plant11.8CN_SD_Dezhou_2010
4ILTM-F2:3-2014BWT (g)6CN_SD_Dezhou_2010
5ILTM-F2:3-2014FEL (%)6.9CN_SD_Dezhou_2010
6ILTM-F2:3-2014FL (mm)29.8CN_SD_Dezhou_2010
7ILTM-F2:3-2014FS (cN/tex)30.2CN_SD_Dezhou_2010
8ILTM-F2:3-2014FUI (%)82.5CN_SD_Dezhou_2010
9ILTM-F2:3-2014LP (%)32.1CN_SD_Dezhou_2010
10ILTM-F2:3-2014MIC (unit)4.8CN_SD_Dezhou_2010
11ILTM-F2:3-2014SFC HVI (%)9.8CN_SD_Dezhou_2010
12ILTM-F2:3-2014BN per plant11.5CN_SD_Dezhou_2011
13ILTM-F2:3-2014BWT (g)5.8CN_SD_Dezhou_2011
14ILTM-F2:3-2014FEL (%)6.7CN_SD_Dezhou_2011
15ILTM-F2:3-2014FL (mm)29.6CN_SD_Dezhou_2011
16ILTM-F2:3-2014FS (cN/tex)31.3CN_SD_Dezhou_2011
17ILTM-F2:3-2014FUI (%)81.6CN_SD_Dezhou_2011
18ILTM-F2:3-2014LP (%)31.7CN_SD_Dezhou_2011
19ILTM-F2:3-2014MIC (unit)4.7CN_SD_Dezhou_2011
20ILTM-F2:3-2014SFC HVI (%)9.5CN_SD_Dezhou_2011
21ILTM-F2:3-2014BN per plant12.1CN_SD_Dezhou_2012
22ILTM-F2:3-2014BWT (g)6.1CN_SD_Dezhou_2012
23ILTM-F2:3-2014FEL (%)6.5CN_SD_Dezhou_2012
24ILTM-F2:3-2014FL (mm)30.1CN_SD_Dezhou_2012
25ILTM-F2:3-2014FS (cN/tex)30.5CN_SD_Dezhou_2012
26ILTM-F2:3-2014FUI (%)83.4CN_SD_Dezhou_2012
27ILTM-F2:3-2014LP (%)32.2CN_SD_Dezhou_2012
28ILTM-F2:3-2014MIC (unit)4.6CN_SD_Dezhou_2012
29ILTM-F2:3-2014SFC HVI (%)10.2CN_SD_Dezhou_2012
30RBTN - evaluation beyond fiber yield and qualityFOV4 FS (0-5)1.29US_CA_SHAFTER_2010
31RBTN - evaluation beyond fiber yield and qualityFOV4 RVS (0-5)2.57US_CA_SHAFTER_2010
32RBTN - evaluation beyond fiber yield and qualityFOV4 plant survival (%)70.96US_CA_SHAFTER_2010
33RBTN - evaluation beyond fiber yield and qualityFOV4 plant height (cm)42.43US_CA_SHAFTER_2010
34RBTN - evaluation beyond fiber yield and qualityFOV4 num of stem node11.79US_CA_SHAFTER_2010
35RBTN - evaluation beyond fiber yield and qualityFOV1-RKN FS (0-5)0.8US_CA_SHAUSDA_2010
36RBTN - evaluation beyond fiber yield and qualityFOV1-RKN RVS (0-5)2.6US_CA_SHAUSDA_2010
37RBTN - evaluation beyond fiber yield and qualityFOV1-RKN plant survival (%)70.96US_CA_SHAUSDA_2010
38RBTN - evaluation beyond fiber yield and qualityFOV1-RKN plant height (cm)54.93US_CA_SHAUSDA_2010
39RBTN - evaluation beyond fiber yield and qualityFOV1-RKN num of stem node14.8US_CA_SHAUSDA_2010
40TTT-CSIL-2016BWT (g)6.35CN_HN_SY_2015
41TTT-CSIL-2016FEL (%)6.8CN_HN_SY_2015
42TTT-CSIL-2016FS (cN/tex)29.76CN_HN_SY_2015
43TTT-CSIL-2016FUI (%)85.17CN_HN_SY_2015
44TTT-CSIL-2016LP (%)0.39CN_HN_SY_2015
45TTT-CSIL-2016MIC (unit)3.72CN_HN_SY_2015
46TTT-CSIL-2016SI (g)12.83CN_HN_SY_2015
47TTT-CSIL-2016SL2.5 (mm)29.11CN_HN_SY_2015
48TTT-CSIL-2016BWT (g)6.54CN_JS_DF_2014
49TTT-CSIL-2016FEL (%)11.67CN_JS_DF_2014
50TTT-CSIL-2016FS (cN/tex)29.63CN_JS_DF_2014
51TTT-CSIL-2016FUI (%)84.37CN_JS_DF_2014
52TTT-CSIL-2016LP (%)0.32CN_JS_DF_2014
53TTT-CSIL-2016MIC (unit)4.57CN_JS_DF_2014
54TTT-CSIL-2016SI (g)12.94CN_JS_DF_2014
55TTT-CSIL-2016SL2.5 (mm)29.97CN_JS_DF_2014
56TTT-CSIL-2016BWT (g)5.91CN_JS_NJ_2013
57TTT-CSIL-2016FEL (%)5.1CN_JS_NJ_2013
58TTT-CSIL-2016FS (cN/tex)32CN_JS_NJ_2013
59TTT-CSIL-2016FUI (%)83.73CN_JS_NJ_2013
60TTT-CSIL-2016LP (%)0.3CN_JS_NJ_2013
61TTT-CSIL-2016MIC (unit)5.27CN_JS_NJ_2013
62TTT-CSIL-2016SI (g)13.83CN_JS_NJ_2013
63TTT-CSIL-2016SL2.5 (mm)30.01CN_JS_NJ_2013
64TTT-CSIL-2016BWT (g)6.1CN_JS_NJ_2014
65TTT-CSIL-2016FEL (%)9.2CN_JS_NJ_2014
66TTT-CSIL-2016FS (cN/tex)32.03CN_JS_NJ_2014
67TTT-CSIL-2016FUI (%)85.17CN_JS_NJ_2014
68TTT-CSIL-2016LP (%)0.32CN_JS_NJ_2014
69TTT-CSIL-2016MIC (unit)4.84CN_JS_NJ_2014
70TTT-CSIL-2016SI (g)13.55CN_JS_NJ_2014
71TTT-CSIL-2016SL2.5 (mm)31.36CN_JS_NJ_2014