USDA_SNP0329, USDA_SNP0329 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0329
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00073Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04chromosomeChr04:56984200..56984200 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018222.1chromosomeCM018222.1:60292779..60292841 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:113230656..113230718 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:56477923..56477985 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:123276050..123276112 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:4853218..4853280 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:7571807..7571869 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold862.1supercontigscaffold862.1:616256..616318 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:51424113..51424175 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold151579supercontigscaffold151579:83..145 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold115218supercontigscaffold115218:83..145 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:63275853..63275915 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:116723990..116724052 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:63701319..63701381 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:119385265..119385327 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:63112047..63112109 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:119559905..119559967 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:60404617..60404679 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:60411538..60411600 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:113862631..113862693 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:62275769..62275831 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:114892124..114892186 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:61931078..61931140 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:113469611..113469673 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:64167515..64167577 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:122996984..122997046 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:60689858..60689920 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:114094631..114094693 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:63897562..63897624 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:121425158..121425220 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:125824415..125824477 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:126727033..126727095 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:57357465..57357527 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:98308116..98308178 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:58832536..58832598 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_04chromosomeChr_04:41206027..41206089 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:61254799..61254861 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:38892850..38892912 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:39819464..39819526 -Gossypium lobatum (D7) genome ISU_v1n/a
F08chromosomeF08:99654422..99654484 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:8039807..8039869 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0329 ID=USDA_SNP0329; Name=USDA_SNP0329; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTGGA[A/C]ACTGAGCAGAAGCTTTAAGCTGGTCTCCAATCGCC
GCCGTATTCCGCTGTGC