NAU2265, NAU2265 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2265
Genbank IDDT048657
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048657.1
Source TypeEST
Repeat MotifACAT(10)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2265_F: CAATCACATTGATGCCAACT
Primer 2NAU2265_R: CGGTTAAGCTTCCAGACATT
Product Length224
PolymorphismP_ NAU2265
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Germplasm
Stock NameType
Xuzhou 142breeding_germplasm
Xuzhou 142breeding_germplasm
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048657
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
NAU2265_FNAU2265_FGossypium hirsutumprimer
NAU2265_RNAU2265_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber uniformityqFU.YCY7-4WC_chr02-1.bb09Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
NAU2265NAU2265Gossypium hirsutummarker_locus
NAU2265aNAU2265aGossypium hirsutummarker_locus
NAU2265bNAU2265bGossypium hirsutummarker_locus
NAU2265-380NAU2265-380Gossypium hirsutummarker_locus
NAU2265/210t(C2)NAU2265/210t(C2)Gossypium hirsutummarker_locus
NAU2265NAU2265-119.4Gossypium hirsutummarker_locus
NAU2265aNAU2265a-3.664Gossypium hirsutummarker_locus
NAU2265bNAU2265b-126.097Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048657.1DT048657.1Gossypium hirsutumsequence_feature


Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Agricultural University of Nanjing
Address:Weigang 1#, Nanjing, Jiangsu 210095
Country:China
Email:cotton@njau.edu.cn
Phone:+86 25 84395307
Fax:+86 25 84395307
Keywords:Genetics and Breeding
Last update:18-Mar-2011
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:354358..354577 +
A02chromosomeA02:90051651..90051886 -
CM018217.1chromosomeCM018217.1:319507..319730 +
CM018203.1chromosomeCM018203.1:99541292..99541507 -
D5_02chromosomeD5_02:294531..294734 +
Chr1chromosomeChr1:134891636..134891867 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:442840..443071 +
Chr3chromosomeChr3:25607934..25608137 +
scaffold1977.1supercontigscaffold1977.1:310678..310897 +
At_chr4chromosomeAt_chr4:23362330..23362565 -
D03chromosomeD03:311898..312121 +
A02chromosomeA02:83057705..83057940 -
Ghir_D03chromosomeGhir_D03:315843..316062 +
Ghir_A02chromosomeGhir_A02:107705898..107706133 -
D03chromosomeD03:317494..317713 +
A02chromosomeA02:107903525..107903760 -
D03chromosomeD03:313033..313252 +
A02chromosomeA02:105363308..105363543 -
D03chromosomeD03:317868..318087 +
A02chromosomeA02:103944428..103944663 -
At02chromosomeAt02:89471097..89471312 -
scaffold28823supercontigscaffold28823:59171..59394 -
scaffold23613supercontigscaffold23613:146546..146761 -
Gbar_D03chromosomeGbar_D03:312320..312543 +
Gbar_A02chromosomeGbar_A02:99834962..99835177 -
D03chromosomeD03:319642..319861 +
A02chromosomeA02:101772449..101772664 -
CM017625.1chromosomeCM017625.1:317721..317940 +
CM017611.1chromosomeCM017611.1:104749307..104749518 -
CM017651.1chromosomeCM017651.1:371946..372161 +
CM017637.1chromosomeCM017637.1:109541231..109541466 -
CM017703.1chromosomeCM017703.1:341640..341851 +
CM017689.1chromosomeCM017689.1:101923852..101924055 -
Chr03chromosomeNAU2265:4..550 .
Chr03:302127..302653 +
Chr3chromosomeNAU2265:4..550 .
Chr3:25607876..25608402 +
Sequence
>NAU2265 ID=NAU2265|Name=NAU2265|organism=Gossypium hirsutum|type=genetic_marker|length=224bp
CAATCACATTGATGCCAACTGAACGAGNCACATGATGCACACTTCACACA
CATGTACACACTTGCACAGACATACATACATACATACATACATACATACA
TACATACATACAACGACGCACATTTTTTGCAAACTAATGCCTCAACAAAG
AACTAAGAACAGAAGAAATCTGCAATGGGTACACATGGTGATTTACGTCG
TAAGAATGTCTGGAAGCTTAACCG
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c02N/AAD_chr.0299.44NAU2265
2Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch02N/AAD_chr.0274.96NAU2265
3AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr02N/AAD_chr.027NAU2265
4Yumian-1 x T586, RIL (2006)YT-RIL_chr02-2N/AAD_chr.0286.8NAU2265
5(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr02-1N/AAD_chr.020NAU2265
6Yumian-1 x T586, RIL (2015)YT-RIL.15_chr02N/AAD_chr.02136.9NAU2265
7Prema x 86-1, RIL (2015)P8-RIL_chr02.2N/AAD_chr.024.04NAU2265
8Yumian-1 x 7235, RIL (2015)Y7-RIL_chr02N/AAD_chr.0299.6NAU2265
9GX1135 x GX100-2, F2 (2013)GG-F2_chr02-4N/AAD_chr.020NAU2265
10GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr04-1N/AAD_chr.04129.2NAU2265
110-153 x sGK9708, RIL (2016)0s-RIL_chr02-3N/AAD_chr.0259.6NAU2265
12CCRI 12-4 x (AD)5-7, F2 (2015)CAD5-F2_chr02N/AAt.02175.6NAU2265
13CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr02N/AAD_chr.021.3NAU2265
140-153 x sGK9708, RIL (2017)0s-RIL.17_chr02N/AAD_chr.023.82NAU2265
15TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c02N/AAD_chr.023.67NAU2265a
16TM-1 x 3-79, RIL (2014)T3-RIL.14_chr02N/AAD_chr.023.7NAU2265a
17TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c14N/AAD_chr.140.32NAU2265b
18TM-1 x 3-79, RIL (2014)T3-RIL.14_chr14N/AAD_chr.14126.1NAU2265b
19TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr02N/AAD_chr.025.4NAU2265-380
20TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr02/A2N/AAD_chr.02109.46NAU2265-380
21Yumian-1 x T586, RIL (2009)YT-RIL_chr02-1N/AAD_chr.026.4NAU2265/210t(C2)
22CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr02N/AAt.02119.4NAU2265
23TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.02N/AAD_chr.023.66NAU2265a
24TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.14N/AAD_chr.14126.1NAU2265b