USDA_SNP0363, USDA_SNP0363 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0363
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00081Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr05chromosomeChr05:59232352..59232352 .
CM018216.1chromosomeCM018216.1:61944345..61944407 -
CM018204.1chromosomeCM018204.1:100178854..100178916 -
D5_03chromosomeD5_03:4980802..4980864 +
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:129692017..129692079 -
CM016616.1chromosomeCM016616.1:7083919..7083981 +
Dt_chr5chromosomeDt_chr5:11894267..11894329 +
At_chr5chromosomeAt_chr5:50758938..50759000 +
D02chromosomeD02:62838137..62838199 -
A03chromosomeA03:94525461..94525523 -
Ghir_D02chromosomeGhir_D02:64644260..64644322 -
Ghir_A03chromosomeGhir_A03:106885624..106885686 -
D02chromosomeD02:64772946..64773008 -
A03chromosomeA03:105780953..105781015 -
D02chromosomeD02:65981128..65981190 -
A03chromosomeA03:103952061..103952123 -
D02chromosomeD02:63106197..63106259 -
A03chromosomeA03:99209403..99209465 -
Gbar_D02chromosomeGbar_D02:62542248..62542310 -
Gbar_A03chromosomeGbar_A03:99339957..99340019 -
D02chromosomeD02:63850575..63850637 -
A03chromosomeA03:101695740..101695802 -
CM017624.1chromosomeCM017624.1:64889191..64889253 -
CM017612.1chromosomeCM017612.1:100948427..100948489 -
CM017650.1chromosomeCM017650.1:66502750..66502812 -
CM017638.1chromosomeCM017638.1:108148746..108148808 -
CM017702.1chromosomeCM017702.1:63422767..63422829 -
CM017690.1chromosomeCM017690.1:102128819..102128881 -
D02chromosomeD02:66989386..66989448 -
A03chromosomeA03:107558008..107558070 -
Chr03chromosomeChr03:6002166..6002228 +
Chr03chromosomeChr03:58114486..58114548 -
B_03chromosomeB_03:6202217..6202279 +
Chr05chromosomeChr05:61083552..61083614 -
Chr_05chromosomeChr_05:39726624..39726686 -
Chr05chromosomeChr05:62635558..62635620 -
Chr05chromosomeChr05:34076004..34076066 -
Chr05chromosomeChr05:41815078..41815140 -
F03chromosomeF03:105072637..105072699 -
Chr03chromosomeChr03:8106528..8106590 +
Sequence
>USDA_SNP0363 ID=USDA_SNP0363; Name=USDA_SNP0363; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGCACAGGGAGGAGCACCACCACACCTTCAGCCAATTTGCACTTTC
CAACA[A/G]CTAGAAG