USDA_SNP0304, USDA_SNP0304 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0304
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00068Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr09chromosomeChr09:18759734..18759734 .
CM018219.1chromosomeCM018219.1:19999875..19999937 +
CM018206.1chromosomeCM018206.1:22119221..22119283 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:22630320..22630382 +
D10_05chromosomeD10_05:41581431..41581493 -
CM016618.1chromosomeCM016618.1:89733980..89734042 -
Dt_chr9chromosomeDt_chr9:48245019..48245081 +
At_chr9chromosomeAt_chr9:38572525..38572587 -
scaffold5729supercontigscaffold5729:8517..8579 +
A05chromosomeA05:20437584..20437646 +
Ghir_D05chromosomeGhir_D05:20488428..20488490 +
Ghir_A05chromosomeGhir_A05:22640882..22640944 +
D05chromosomeD05:20021414..20021476 +
A05chromosomeA05:22007380..22007442 +
D05chromosomeD05:20338893..20338955 +
A05chromosomeA05:22685111..22685173 +
D05chromosomeD05:20215175..20215237 +
A05chromosomeA05:22838984..22839046 +
Gbar_D05chromosomeGbar_D05:20362630..20362692 +
Gbar_A05chromosomeGbar_A05:21787890..21787952 +
D05chromosomeD05:20374640..20374702 +
A05chromosomeA05:22477586..22477648 +
CM017627.1chromosomeCM017627.1:20206119..20206181 +
CM017614.1chromosomeCM017614.1:22258288..22258350 +
CM017653.1chromosomeCM017653.1:20646093..20646155 +
CM017640.1chromosomeCM017640.1:22622942..22623004 +
CM017705.1chromosomeCM017705.1:20308459..20308521 +
CM017692.1chromosomeCM017692.1:22005384..22005446 +
D05chromosomeD05:20799909..20799971 +
A05chromosomeA05:23041779..23041841 +
Chr05chromosomeChr05:24214110..24214172 +
Chr05chromosomeChr05:22542866..22542928 +
Chr05chromosomeChr05:18874782..18874844 +
B_05chromosomeB_05:63885081..63885143 -
Chr09chromosomeChr09:19476731..19476793 +
chr09chromosomechr09:17408777..17408839 +
Chr_09chromosomeChr_09:16177798..16177860 +
Chr09chromosomeChr09:20122490..20122552 +
Chr09chromosomeChr09:16463252..16463314 +
Chr09chromosomeChr09:14444895..14444957 +
F05chromosomeF05:19384913..19384975 +
Sequence
>USDA_SNP0304 ID=USDA_SNP0304; Name=USDA_SNP0304; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCCC[C/T]CTTGTTTTTCTTGTTTAATTCATTTTGTAGGTGACAT
TCCTTGTGTTCTGAAAC