MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_12115379	Chr09_12115378	marker_locus	126.57 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_13870693	Chr09_13870693	marker_locus	132.52 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_14144689	Chr09_14144688	marker_locus	141.93 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_15026052	Chr09_15026052	marker_locus	151.59 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_15691510	Chr09_15691509	marker_locus	156.24 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_17144886	Chr09_17144885	marker_locus	164.27 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_18491954	Chr09_18491954	marker_locus	179.05 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_20137532	Chr09_20137531	marker_locus	191.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_19982613	Chr09_19982612	marker_locus	196.54 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_19713709	Chr09_19713708	marker_locus	203.73 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_20420379	Chr09_20420378	marker_locus	210.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_21433790	Chr09_21433789	marker_locus	216.14 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_21342894	Chr09_21342894	marker_locus	223.41 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5Chr09_21902716	Chr09_21902715	marker_locus	228.77 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_22766726	Chr09_22766726	marker_locus	232.87 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C05_LG17	CSIRO_D5chr09_24246311	Chr09_24246310	marker_locus	249.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5chr10_4033809	Chr10_4033808	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5chr10_3572984	Chr10_3572983	marker_locus	9.29 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5Chr10_44625548	Chr10_44625547	marker_locus	15.06 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5chr10_2879426	Chr10_2879425	marker_locus	16.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5chr10_3251048	Chr10_3251047	marker_locus	19.68 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5chr10_2980457	Chr10_2980456	marker_locus	21.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5chr10_2242979	Chr10_2242978	marker_locus	27.05 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5chr10_1209145	Chr10_1209144	marker_locus	35.8 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG20	CSIRO_D5chr10_1499050	Chr10_1499049	marker_locus	37.86 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)