MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_55813947	Chr05_55813947	marker_locus	26.4 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr02_28576563	Chr02_28576563	marker_locus	27.95 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_55200050	Chr05_55200050	marker_locus	36.02 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_53684262	Chr05_53684261	marker_locus	38.46 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr01_13004211	Chr01_13004211	marker_locus	44.65 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_54467314	Chr05_54467313	marker_locus	45.71 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_52166965	Chr05_52166965	marker_locus	51.29 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_51318242	Chr05_51318242	marker_locus	52.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_51786680	Chr05_51786679	marker_locus	53.32 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_51584575	Chr05_51584574	marker_locus	53.77 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_50435538	Chr05_50435537	marker_locus	53.99 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_50624838	Chr05_50624837	marker_locus	55.05 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5Chr05_50220843	Chr05_50220842	marker_locus	57.23 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_49928559	Chr05_49928559	marker_locus	58.95 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_49542523	Chr05_49542523	marker_locus	60.72 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_45956282	Chr05_45956281	marker_locus	63.43 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_41890866	Chr05_41890865	marker_locus	67.11 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_40483960	Chr05_40483959	marker_locus	70.04 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_39591392	Chr05_39591392	marker_locus	73.96 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_38809346	Chr05_38809346	marker_locus	77.8 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C02_LG06	CSIRO_D5chr05_35555787	Chr05_35555786	marker_locus	78.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG09	CSIRO_D5chr03_679427	Chr03_679426	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG09	CSIRO_D5chr03_328257	Chr03_328256	marker_locus	4.78 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG09	CSIRO_D5chr03_61793	Chr03_61793	marker_locus	5.65 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG09	CSIRO_D5chr03_177889	Chr03_177888	marker_locus	12.94 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)