MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_8840394	Chr06_8840393	marker_locus	58.25 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_9012512	Chr06_9012511	marker_locus	58.68 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_11247678	Chr06_11247677	marker_locus	62.61 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_10799720	Chr06_10799720	marker_locus	64.63 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_11205069	Chr06_11205069	marker_locus	65.97 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr11_39818558	Chr11_39818558	marker_locus	69.55 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_27794246	Chr06_27794246	marker_locus	71.95 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5Chr06_23414747	Chr06_23414746	marker_locus	74.83 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_11938825	Chr06_11938824	marker_locus	79.99 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_21592680	Chr06_21592679	marker_locus	81.51 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_29885073	Chr06_29885072	marker_locus	85.57 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_32610414	Chr06_32610413	marker_locus	100.87 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG34	CSIRO_D5chr06_35613352	Chr06_35613352	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG34	CSIRO_D5chr06_35325499	Chr06_35325498	marker_locus	1.73 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG34	CSIRO_D5chr06_36030588	Chr06_36030587	marker_locus	3.72 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG34	CSIRO_D5chr06_36460285	Chr06_36460284	marker_locus	8.36 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG35	CSIRO_D5chr06_39160502	Chr06_39160502	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG35	CSIRO_D5chr06_39454591	Chr06_39454590	marker_locus	4.99 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG35	CSIRO_D5chr06_42816916	Chr06_42816915	marker_locus	18.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG35	CSIRO_D5chr06_43776612	Chr06_43776611	marker_locus	27.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG35	CSIRO_D5chr06_45501549	Chr06_45501549	marker_locus	43.3 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG35	CSIRO_D5chr06_46475696	Chr06_46475695	marker_locus	51.63 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG35	CSIRO_D5chr06_47059098	Chr06_47059097	marker_locus	57.24 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG35	CSIRO_D5chr06_48552887	Chr06_48552886	marker_locus	65.4 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C10_LG37	CSIRO_D5chr11_3840828	Chr11_3840827	marker_locus	0 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)