MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_36752786	Chr04_36752786	marker_locus	230.6 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr09_57103871	Chr09_57103871	marker_locus	231.68 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_26967635	Chr04_26967635	marker_locus	232.16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr09_64345676	Chr09_64345676	marker_locus	232.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr11_31268656	Chr11_31268656	marker_locus	234.21 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_23579280	Chr04_23579280	marker_locus	235.8 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_22457274	Chr04_22457273	marker_locus	236.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_20218168	Chr04_20218167	marker_locus	236.44 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_12413214	Chr04_12413214	marker_locus	236.65 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_16154787	Chr04_16154786	marker_locus	236.86 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_23986958	Chr04_23986957	marker_locus	237.07 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_31069471	Chr04_31069470	marker_locus	237.28 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_37633562	Chr04_37633562	marker_locus	237.7 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_33961750	Chr04_33961750	marker_locus	239.43 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_33494951	Chr04_33494950	marker_locus	240.5 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_40823577	Chr04_40823576	marker_locus	243.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_5330728	Chr04_5330727	marker_locus	257.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_1841505	Chr06_1841505	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_2315267	Chr06_2315266	marker_locus	8.33 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_3080986	Chr06_3080985	marker_locus	20.48 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr13_20527757	Chr13_20527757	marker_locus	29.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_5543059	Chr06_5543059	marker_locus	31.78 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_5190918	Chr06_5190918	marker_locus	33.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_6187390	Chr06_6187389	marker_locus	36.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C09_LG33	CSIRO_D5chr06_6557357	Chr06_6557357	marker_locus	45.62 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)