MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_32975040	Chr03_32975039	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_31558126	Chr03_31558125	marker_locus	0.21 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr05_27106237	Chr05_27106236	marker_locus	1.73 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_34558828	Chr03_34558827	marker_locus	6.31 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5Chr03_34219784	Chr03_34219783	marker_locus	6.94 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_33923635	Chr03_33923634	marker_locus	7.37 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_33300243	Chr03_33300242	marker_locus	8.24 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr05_23759086	Chr05_23759085	marker_locus	17.34 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_35239747	Chr03_35239747	marker_locus	21.75 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_37339037	Chr03_37339036	marker_locus	25.24 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_36351358	Chr03_36351358	marker_locus	27.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_36618461	Chr03_36618460	marker_locus	28.79 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_36738186	Chr03_36738185	marker_locus	30.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_38402464	Chr03_38402463	marker_locus	36.19 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_38700306	Chr03_38700306	marker_locus	39.4 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_39220997	Chr03_39220996	marker_locus	44.56 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG10	CSIRO_D5chr03_40049074	Chr03_40049073	marker_locus	49.39 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG11	CSIRO_D5chr03_41335296	Chr03_41335295	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG11	CSIRO_D5Chr03_41807911	Chr03_41807910	marker_locus	6.22 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG11	CSIRO_D5chr03_42011509	Chr03_42011508	marker_locus	8.88 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG11	CSIRO_D5chr03_42319319	Chr03_42319319	marker_locus	10.61 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG11	CSIRO_D5chr03_42557933	Chr03_42557932	marker_locus	22.83 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG11	CSIRO_D5chr03_42649219	Chr03_42649218	marker_locus	23.26 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG11	CSIRO_D5chr03_42789176	Chr03_42789175	marker_locus	24.34 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C03_LG11	CSIRO_D5Chr03_42709944	Chr03_42709943	marker_locus	24.55 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)