MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG24	CSIRO_D5chr01_52331971	Chr01_52331970	marker_locus	54.35 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG24	CSIRO_D5chr01_52859407	Chr01_52859407	marker_locus	62.39 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG24	CSIRO_D5chr01_53206266	Chr01_53206266	marker_locus	73.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG24	CSIRO_D5chr01_53305114	Chr01_53305113	marker_locus	76.68 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG24	CSIRO_D5chr01_55199441	Chr01_55199440	marker_locus	94.78 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG24	CSIRO_D5chr01_54584374	Chr01_54584373	marker_locus	104.02 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG24	CSIRO_D5chr01_54322499	Chr01_54322498	marker_locus	108.14 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG28	CSIRO_D5chr04_750685	Chr04_750684	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG28	CSIRO_D5chr04_1473579	Chr04_1473579	marker_locus	10.56 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG28	CSIRO_D5chr04_1308921	Chr04_1308921	marker_locus	14.14 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG28	CSIRO_D5chr04_1285068	Chr04_1285067	marker_locus	20.36 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_57981236	Chr04_57981235	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_58975167	Chr04_58975166	marker_locus	13.34 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_59538893	Chr04_59538892	marker_locus	17.46 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_60610352	Chr04_60610351	marker_locus	38.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_61043655	Chr04_61043654	marker_locus	49.79 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5Chr04_61422362	Chr04_61422361	marker_locus	52.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_50534778	Chr04_50534777	marker_locus	92.93 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_47228258	Chr04_47228257	marker_locus	107.84 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_47031386	Chr04_47031385	marker_locus	111.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_51928935	Chr04_51928935	marker_locus	127.31 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_54421220	Chr04_54421219	marker_locus	142.52 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_55130604	Chr04_55130603	marker_locus	154.18 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_56263856	Chr04_56263855	marker_locus	163.49 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C08_LG29	CSIRO_D5chr04_5479717	Chr04_5479717	marker_locus	198.79 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)