MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_51830926	Chr10_51830925	marker_locus	33.18 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_51328436	Chr10_51328435	marker_locus	33.83 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_54960209	Chr10_54960208	marker_locus	44.55 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_55924037	Chr10_55924036	marker_locus	47.07 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_56907168	Chr10_56907167	marker_locus	53.2 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_56245632	Chr10_56245631	marker_locus	60.07 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_56752474	Chr10_56752474	marker_locus	64.28 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5Chr10_57156444	Chr10_57156443	marker_locus	67.73 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_57522487	Chr10_57522486	marker_locus	74.16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5s15_43693	scaffold_15_43693	marker_locus	83.38 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_57832510	Chr10_57832509	marker_locus	85.6 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_58138923	Chr10_58138922	marker_locus	86.26 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_59199717	Chr10_59199716	marker_locus	92.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_59525769	Chr10_59525769	marker_locus	101.84 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_59704286	Chr10_59704285	marker_locus	104.03 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_60672346	Chr10_60672345	marker_locus	116.25 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_62154885	Chr10_62154884	marker_locus	125.04 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	CSIRO_D5chr10_62158489	Chr10_62158488	marker_locus	131.36 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG23	CSIRO_D5chr01_824043	Chr01_824043	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG23	CSIRO_D5chr01_1291020	Chr01_1291019	marker_locus	5.96 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG23	CSIRO_D5chr01_1987322	Chr01_1987321	marker_locus	14.37 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG23	CSIRO_D5chr01_1859879	Chr01_1859879	marker_locus	23.08 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG23	CSIRO_D5chr01_2157867	Chr01_2157866	marker_locus	26.66 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG23	CSIRO_D5chr01_2348348	Chr01_2348348	marker_locus	30.65 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C07_LG23	CSIRO_D5chr01_2415482	Chr01_2415482	marker_locus	33.32 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)