TAM 2562 RKNR

Germplasm Overview


Name	TAM 2562 RKNR
Alias	GP-693 [view all 5]
GRIN ID	PI 607225 PI 603929
Type	Breeding Germplasm
Species	Gossypium hirsutum
In Collection	[view all]
Description	High level of resistance to Root-knot nematode (Meloidogyne incognita). Normal in morphology compared with most upland cotton genotypes, including pubescent leaves and stems, and cream-colored flowers and pollen. Yields competitively with Paymaster HS-26 when grown on the High Plains of Texas. Equal to Paymaster HS-26 in standard fiber quality parameters.
Origin Country	United States
Origin Detail	United States, Texas
Pedigree	M-240RNR/86T(2)-12
Maternal Parent	N/A
Paternal Parent	N/A
Maternal Parent of	N/A
Paternal Parent of	N/A
Phenotypic Data	[view all 68]
SSR Genotype Data	[view all 104]
SNP Genotype Data	[view all 63056]
Map	N/A
DNA Library	N/A
Sequence	N/A
Comments	N/A
Reference	Starr JL, Smith CW. Registration of Three Root‐Knot Nematode Resistant Germplasm Lines of Upland Cotton. Crop Science. 1999 Nov 1, 39(1):303-303.

Alias


Synonym
GP-693
PI 603929
PI 607225
SA 2401
SA-2401

Image


File Name	Legend	Dataset
SA-2401_CS12-2814_IMG_4638_L.jpg	[SA-2401] leaf, College Station Plot# 2813, 2012	NCGC digital imaging (College Station, 2012)
SA-2401_CS12-2814_MG_3446_LB.jpg	[SA-2401] leaf close up of the back surface, College Station Plot# 2814, 2012	NCGC digital imaging (College Station, 2012)
SA-2401_CS12-2814_MG_7056_B.jpg	[SA-2401] green boll, College Station Plot# 2814, 2012	NCGC digital imaging (College Station, 2012)
SA-2401_CS12-2814_MG_7057_BO.jpg	[SA-2401] boll open, College Station Plot# 2814, 2012	NCGC digital imaging (College Station, 2012)
SA-2401_CS12-2814_MG_7058_BN.jpg	[SA-2401] boll showing nectaries, College Station Plot# 2814, 2012	NCGC digital imaging (College Station, 2012)

Phenotypic Data

Total 68 trait scores

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#	Dataset	Descriptor	Value	Environment	Plot
1	NCGC germplasm evaluation, Before2006	leaf color	green	Not Available
2	NCGC germplasm evaluation, Before2006	lint color	white	Not Available
3	NCGC germplasm evaluation, CS12	boll color	green	US_TX_CS_2012	2814
4	NCGC germplasm evaluation, CS12	boll gossypol glands	heavy	US_TX_CS_2012	2814
5	NCGC germplasm evaluation, CS12	boll nectaries	reduced	US_TX_CS_2012	2814
6	NCGC germplasm evaluation, CS12	boll pitting	smooth	US_TX_CS_2012	2814
7	NCGC germplasm evaluation, CS12	boll point	moderately pointed	US_TX_CS_2012	2814
8	NCGC germplasm evaluation, CS12	boll shape	round	US_TX_CS_2012	2814
9	NCGC germplasm evaluation, CS12	boll size	medium	US_TX_CS_2012	2814
10	NCGC germplasm evaluation, CS12	bract color	sun red	US_TX_CS_2012	2814
11	NCGC germplasm evaluation, CS12	bract nectaries	present	US_TX_CS_2012	2814
12	NCGC germplasm evaluation, CS12	bract teeth size	large	US_TX_CS_2012	2814
13	NCGC germplasm evaluation, CS12	bract type	normal	US_TX_CS_2012	2814
14	NCGC germplasm evaluation, CS12	canopy type	typical	US_TX_CS_2012	2814
15	NCGC germplasm evaluation, CS12	leaf color	green	US_TX_CS_2012	2814
16	NCGC germplasm evaluation, CS12	leaf gossypol glands	medium	US_TX_CS_2012	2814
17	NCGC germplasm evaluation, CS12	leaf shape	normal	US_TX_CS_2012	2814
18	NCGC germplasm evaluation, CS12	leaf size	medium	US_TX_CS_2012	2814
19	NCGC germplasm evaluation, CS12	lint color	white	US_TX_CS_2012	2814
20	NCGC germplasm evaluation, CS12	plant shape	normal	US_TX_CS_2012	2814
21	NCGC germplasm evaluation, CS12	plot maturity	complete	US_TX_CS_2012	2814
22	NCGC germplasm evaluation, CS12	population homogeneity	uniform	US_TX_CS_2012	2814
23	NCGC germplasm evaluation, CS12	seed fuzz grade	high	US_TX_CS_2012	2814
24	NCGC germplasm evaluation, CS12	stem color	sun red	US_TX_CS_2012	2814
25	NCGC germplasm evaluation, CS12	stem gossypol glands	medium	US_TX_CS_2012	2814

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Ssr Genotype Data

Total 104 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	NCGC_SNTD_SSR_genotype_2015	dpl0094	genetic_marker	197\|249	dpl0094_197; dpl0094_249
2	NCGC_SNTD_SSR_genotype_2015	dpl0520	genetic_marker	187\|195	dpl0520_187; dpl0520_195
3	NCGC_SNTD_SSR_genotype_2015	stv0023	genetic_marker	140\|145	stv0023_140; stv0023_145
4	NCGC_SNTD_SSR_genotype_2015	bnl2496	genetic_marker	145\|150	bnl2496_145; bnl2496_150
5	NCGC_SNTD_SSR_genotype_2015	bnl0569	genetic_marker	135\|137	bnl0569_135; bnl0569_137
6	NCGC_SNTD_SSR_genotype_2015	cir0307	genetic_marker	177\|177	cir0307_177; cir0307_177
7	NCGC_SNTD_SSR_genotype_2015	bnl1417	genetic_marker	97\|97	bnl1417_97; bnl1417_97
8	NCGC_SNTD_SSR_genotype_2015	cir0203	genetic_marker	257\|257	cir0203_257; cir0203_257
9	NCGC_SNTD_SSR_genotype_2015	dpl0600	genetic_marker	168\|168	dpl0600_168; dpl0600_168
10	NCGC_SNTD_SSR_genotype_2015	tmb0514	genetic_marker	193\|197	tmb0514_193; tmb0514_197
11	NCGC_SNTD_SSR_genotype_2015	bnl4030	genetic_marker	114\|114	bnl4030_114; bnl4030_114
12	NCGC_SNTD_SSR_genotype_2015	bnl4071	genetic_marker	213\|232	bnl4071_213; bnl4071_232
13	NCGC_SNTD_SSR_genotype_2015	jespr0008	genetic_marker	273\|273	jespr0008_273; jespr0008_273
14	NCGC_SNTD_SSR_genotype_2015	tmb0382	genetic_marker	182\|182	tmb0382_182; tmb0382_182
15	NCGC_SNTD_SSR_genotype_2015	bnl0387	genetic_marker	204\|212	bnl0387_204; bnl0387_212
16	NCGC_SNTD_SSR_genotype_2015	jespr0300	genetic_marker	198\|207	jespr0300_198; jespr0300_207
17	NCGC_SNTD_SSR_genotype_2015	tmb1295	genetic_marker	215\|220	tmb1295_215; tmb1295_220
18	NCGC_SNTD_SSR_genotype_2015	tmb0799	genetic_marker	150\|178	tmb0799_150; tmb0799_178
19	NCGC_SNTD_SSR_genotype_2015	jespr0153	genetic_marker	96\|101\|113\|126	jespr0153_96; jespr0153_101; jespr0153_113; jespr0153_126
20	NCGC_SNTD_SSR_genotype_2015	gh048	genetic_marker	85\|85	gh048_85; gh048_85
21	NCGC_SNTD_SSR_genotype_2015	bnl1551	genetic_marker	174\|174	bnl1551_174; bnl1551_174
22	NCGC_SNTD_SSR_genotype_2015	bnl2572	genetic_marker	253\|253	bnl2572_253; bnl2572_253
23	NCGC_SNTD_SSR_genotype_2015	cir0286	genetic_marker	124\|130	cir0286_124; cir0286_130
24	NCGC_SNTD_SSR_genotype_2015	jespr0274	genetic_marker	99\|101\|107\|119	jespr0274_99; jespr0274_101; jespr0274_107; jespr0274_119
25	NCGC_SNTD_SSR_genotype_2015	dpl0168	genetic_marker	213\|236	dpl0168_213; dpl0168_236

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Publications


Year	Publication
1998	Starr JL, Smith CW. Registration of Three Root‐Knot Nematode Resistant Germplasm Lines of Upland Cotton. Crop Science. 1999 Nov 1, 39(1):303-303.

Snp Genotype Data

Total 63,056 records

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#	Dataset	Marker Name	Allele	Genotype
1	TAMU_SNP63K_genotype	USDA_SNP0016	C/T	T
2	TAMU_SNP63K_genotype	USDA_SNP0020	A/C	C
3	TAMU_SNP63K_genotype	USDA_SNP0022	T/C	T
4	TAMU_SNP63K_genotype	USDA_SNP0026	G/T	G
5	TAMU_SNP63K_genotype	USDA_SNP0027	A/G	A
6	TAMU_SNP63K_genotype	USDA_SNP0039	C/T	T
7	TAMU_SNP63K_genotype	USDA_SNP0049	A/C	M
8	TAMU_SNP63K_genotype	USDA_SNP0057	C/T	C
9	TAMU_SNP63K_genotype	USDA_SNP0064	A/G	-
10	TAMU_SNP63K_genotype	USDA_SNP0070	C/T	C
11	TAMU_SNP63K_genotype	USDA_SNP0073	A/G	G
12	TAMU_SNP63K_genotype	USDA_SNP0074	A/G	A
13	TAMU_SNP63K_genotype	USDA_SNP0075	A/G	G
14	TAMU_SNP63K_genotype	USDA_SNP0076	A/C	A
15	TAMU_SNP63K_genotype	USDA_SNP0077	A/G	G
16	TAMU_SNP63K_genotype	USDA_SNP0084	A/C	-
17	TAMU_SNP63K_genotype	USDA_SNP0085	C/T	-
18	TAMU_SNP63K_genotype	USDA_SNP0092	C/T	T
19	TAMU_SNP63K_genotype	USDA_SNP0102	C/T	C
20	TAMU_SNP63K_genotype	USDA_SNP0107	A/C	-
21	TAMU_SNP63K_genotype	USDA_SNP0109	A/C	C
22	TAMU_SNP63K_genotype	USDA_SNP0111	G/T	T
23	TAMU_SNP63K_genotype	USDA_SNP0121	A/G	A
24	TAMU_SNP63K_genotype	USDA_SNP0134	A/C	C
25	TAMU_SNP63K_genotype	USDA_SNP0136	G/T	T

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Cross References

External references for this accession


Database	Accession
GRIN_Regist	GP-693
GRIN	PI 603929
GRIN	PI 607225

In Collection

Name	ID used in Collection	External Database
NPGS Crop Science Registration (USA)	GP-693
GRIN NPGS Cotton Collection (USA)	PI 607225; PI 603929	GRIN: ; GRIN:

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