USDA_SNP0020, USDA_SNP0020 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0020
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00003Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr06chromosomeChr06:48898851..48898851 .
CM018223.1chromosomeCM018223.1:48242737..48242799 +
CM018210.1chromosomeCM018210.1:57603490..57603552 +
D5_09chromosomeD5_09:41547576..41547638 +
KI_09chromosomeKI_09:36845221..36845283 +
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:82432814..82432876 +
D10_09chromosomeD10_09:2328199..2328261 -
CM016622.1chromosomeCM016622.1:3356835..3356897 -
scaffold288.1supercontigscaffold288.1:254717..254779 +
scaffold251.1supercontigscaffold251.1:554116..554178 -
scaffold2277_A09supercontigscaffold2277_A09:72773..72835 +
D09chromosomeD09:48480621..48480683 +
Ghir_D09chromosomeGhir_D09:50474139..50474201 +
Ghir_A09chromosomeGhir_A09:79480543..79480605 +
D09chromosomeD09:49772408..49772470 +
A09chromosomeA09:80720867..80720929 +
D09chromosomeD09:50222319..50222381 +
A09chromosomeA09:80929065..80929127 +
D09chromosomeD09:48316647..48316709 +
A09chromosomeA09:77498766..77498828 +
Gbar_D09chromosomeGbar_D09:49115258..49115320 +
Gbar_A09chromosomeGbar_A09:75343844..75343906 +
D09chromosomeD09:51491043..51491105 +
A09chromosomeA09:76766383..76766445 +
CM017631.1chromosomeCM017631.1:49218732..49218794 +
CM017618.1chromosomeCM017618.1:76697873..76697935 +
CM017657.1chromosomeCM017657.1:50752513..50752575 +
CM017644.1chromosomeCM017644.1:80034382..80034444 +
CM017709.1chromosomeCM017709.1:49908652..49908714 +
CM017696.1chromosomeCM017696.1:76849117..76849179 +
D09chromosomeD09:52082974..52083036 +
A09chromosomeA09:82743622..82743684 +
Chr09chromosomeChr09:81846318..81846380 +
Chr09chromosomeChr09:84561561..84561623 +
Chr09chromosomeChr09:47772140..47772202 +
B_09chromosomeB_09:68130960..68131022 +
Chr06chromosomeChr06:48586446..48586508 +
chr06chromosomechr06:40397221..40397283 +
Chr_06chromosomeChr_06:33991690..33991752 +
Chr06chromosomeChr06:49653527..49653589 +
Chr06chromosomeChr06:37598546..37598608 +
Chr06chromosomeChr06:28520360..28520422 +
Chr06chromosomeChr06:34941104..34941166 +
E09chromosomeE09:3060388..3060450 -
F09chromosomeF09:68422477..68422539 +
Chr09chromosomeChr09:129706499..129706561 +
Sequence
>USDA_SNP0020 ID=USDA_SNP0020; Name=USDA_SNP0020; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATGTC[A/C]TTTTCTCGATCCCTCGGTCTTTGGCATGTGACTT
TCAAGAGAGCAGTAATT