USDA_SNP0020, USDA_SNP0020 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0020
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00003Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06chromosomeChr06:48898851..48898851 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018223.1chromosomeCM018223.1:48242737..48242799 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:57603490..57603552 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:41547576..41547638 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:36845221..36845283 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:82432814..82432876 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:2328199..2328261 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:3356835..3356897 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold288.1supercontigscaffold288.1:254717..254779 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold251.1supercontigscaffold251.1:554116..554178 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2277_A09supercontigscaffold2277_A09:72773..72835 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:48480621..48480683 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:50474139..50474201 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:79480543..79480605 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:49772408..49772470 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:80720867..80720929 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:50222319..50222381 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:80929065..80929127 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:48316647..48316709 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:77498766..77498828 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:49115258..49115320 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:75343844..75343906 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:51491043..51491105 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:76766383..76766445 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:49218732..49218794 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:76697873..76697935 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:50752513..50752575 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:80034382..80034444 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:49908652..49908714 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:76849117..76849179 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:52082974..52083036 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:82743622..82743684 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:81846318..81846380 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:84561561..84561623 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:47772140..47772202 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:68130960..68131022 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:48586446..48586508 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:40397221..40397283 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:33991690..33991752 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:49653527..49653589 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:37598546..37598608 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:28520360..28520422 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:34941104..34941166 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:3060388..3060450 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:68422477..68422539 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:129706499..129706561 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0020 ID=USDA_SNP0020; Name=USDA_SNP0020; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATGTC[A/C]TTTTCTCGATCCCTCGGTCTTTGGCATGTGACTT
TCAAGAGAGCAGTAATT