TMB0514, TMB0514 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB0514
AliasTMJ11
Genbank IDBV679377
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679377.1
Source Typegenomic
Repeat Motif(GA)6
PCR ConditionAnnealing temperature: 55
Primer 1TMB0514_F: AAGTGAAGCTTCCCAACAGC
Primer 2TMB0514_R: GGATCAAAACATGGGATTCG
Product Length198
PolymorphismP_ TMB0514
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:19027999..19028190 -
A02chromosomeA02:59587285..59587481 -
CM018217.1chromosomeCM018217.1:23781439..23781630 -
CM018203.1chromosomeCM018203.1:66451692..66451894 -
D5_02chromosomeD5_02:18760251..18760442 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:39870938..39871134 +
CM016615.1chromosomeCM016615.1:49455019..49455215 +
At_chr3chromosomeAt_chr3:41737197..41737393 +
Dt_chr3chromosomeDt_chr3:207940..208131 -
scaffold308_A02supercontigscaffold308_A02:126098..126294 -
D03chromosomeD03:15185844..15186035 -
Ghir_D03chromosomeGhir_D03:23326969..23327160 -
Ghir_A02chromosomeGhir_A02:72358100..72358296 -
D03chromosomeD03:24332664..24332855 -
A02chromosomeA02:72381656..72381852 -
D03chromosomeD03:24105601..24105792 -
A02chromosomeA02:70414249..70414445 -
D03chromosomeD03:23260479..23260670 -
A02chromosomeA02:69572298..69572494 -
Dt03chromosomeDt03:17028033..17028224 -
scaffold7742supercontigscaffold7742:246483..246674 -
scaffold7256supercontigscaffold7256:25994..26196 -
Gbar_D03chromosomeGbar_D03:22562529..22562720 -
Gbar_A02chromosomeGbar_A02:66806373..66806575 -
D03chromosomeD03:24106090..24106281 -
A02chromosomeA02:68589232..68589434 -
CM017625.1chromosomeCM017625.1:23497582..23497773 -
CM017611.1chromosomeCM017611.1:69434374..69434568 -
CM017651.1chromosomeCM017651.1:25793308..25793499 -
CM017637.1chromosomeCM017637.1:74255417..74255615 -
CM017703.1chromosomeCM017703.1:24232051..24232242 -
CM017689.1chromosomeCM017689.1:68215238..68215440 -
D03chromosomeD03:24652875..24653066 -
A02chromosomeA02:71968123..71968319 -
Chr02chromosomeChr02:46542278..46542474 +
Chr02chromosomeChr02:62499325..62499521 -
Chr02chromosomeChr02:20244952..20245143 -
B_04chromosomeB_04:49788833..49789022 +
Chr03chromosomeChr03:20917295..20917487 +
chr03chromosomechr03:20796850..20797042 +
Chr03chromosomeChr03:21569506..21569698 +
Chr03chromosomeChr03:18006935..18007127 +
E02chromosomeE02:39223869..39224067 -
F02chromosomeF02:33551120..33551312 +
Chr02chromosomeChr02:70871100..70871297 -
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679377.1BV679377.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A56.78TMB0514View
2Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A80.15TMB0514View
3AD-genome wide Reference Map (2009)AD_ch02_At.02N/A91TMB0514View
4TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A57.8TMB0514View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A99.3TMB0514View
6TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A57.83TMB0514View
Sequence
>TMB0514 ID=TMB0514; Name=TMB0514; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
AAGTGAAGCTTCCCAACAGCCTCGTATGAAAATGAGAGCCGGGCCAACGG
GGTCTTCTTGTTTTCGTTAATTGAATGCAACCGAAAAAGAGAAAAGCCTA
CCTCTCTCTCTCTCTTTCTCTTCACCAAAATAAAAAGAGTGATTGGATTT
CAGGTTTCCTTGCAATTCTTCTCCTTTCCGAATCCCATGTTTTGATCC