DPL0600, DPL0600 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0600
Genbank IDGQ395081
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395081
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0600_F: AGGCACCTCTTTAGTGATACTAATTCC
Primer 2DPL0600_R: TTAAGGGTAGCCCTCTCAATCTCT
PolymorphismP_ DPL0600
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395081
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:67284281..67284452 +
A10chromosomeA10:111106816..111106983 +
CM018211.1chromosomeCM018211.1:109094767..109094934 +
D5_10chromosomeD5_10:739073..739240 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:536888..537065 +
D10_10chromosomeD10_10:760693..760864 -
CM016623.1chromosomeCM016623.1:144967016..144967178 +
scaffold613.1supercontigscaffold613.1:203774..203945 +
scaffold4395_D10supercontigscaffold4395_D10:11769..11940 +
A10chromosomeA10:100049393..100049560 +
Ghir_D10chromosomeGhir_D10:67000505..67000676 +
Ghir_A10chromosomeGhir_A10:113948922..113949089 +
D10chromosomeD10:66129635..66129806 +
A10chromosomeA10:114302462..114302629 +
D10chromosomeD10:65178951..65179122 +
A10chromosomeA10:114069799..114069966 +
D10chromosomeD10:63429795..63429966 +
A10chromosomeA10:108579921..108580088 +
At10chromosomeAt10:106469403..106469570 +
scaffold1097supercontigscaffold1097:563765..563932 +
scaffold2426supercontigscaffold2426:77766..77939 -
Gbar_D10chromosomeGbar_D10:64914060..64914233 +
Gbar_A10chromosomeGbar_A10:109458148..109458315 +
D10chromosomeD10:66050279..66050452 +
A10chromosomeA10:110841926..110842093 +
CM017632.1chromosomeCM017632.1:64829537..64829708 +
CM017619.1chromosomeCM017619.1:110127838..110128005 +
CM017658.1chromosomeCM017658.1:66923326..66923493 +
CM017645.1chromosomeCM017645.1:117770427..117770594 +
CM017710.1chromosomeCM017710.1:65112432..65112605 +
CM017697.1chromosomeCM017697.1:112341766..112341933 +
D10chromosomeD10:67308849..67309020 +
A10chromosomeA10:117290200..117290367 +
Chr10chromosomeChr10:127525579..127525760 +
Chr10chromosomeChr10:123251116..123251293 +
Chr10chromosomeChr10:61197510..61197677 +
Chr11chromosomeChr11:63251938..63252105 +
chr11chromosomechr11:52101217..52101386 +
Chr_11chromosomeChr_11:43201012..43201175 +
Chr11chromosomeChr11:48768583..48768750 +
Chr11chromosomeChr11:47956446..47956611 +
E10chromosomeE10:1370896..1371079 -
F10chromosomeF10:94231779..94231948 +
Chr10chromosomeChr10:2521866..2522051 +
Chr10chromosomeChr10:2527160..2527333 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395081GQ395081Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A1DPL0600View
2Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A0DPL0600View
3TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A0.98DPL0600View
4TM-1 x Hai-7124, BC1 (2012)AD_ch20_Dt.10N/A2.8dPL0600-260View
5TM-1 x Hai-7124, BC1 (2012)AD_ch20_Dt.10N/A3.3dPL0600-300View
Sequence
>DPL0600 ID=DPL0600; Name=DPL0600; organism=Gossypium hirsutum; type=genetic_marker; length=180bp
AGGCACCTCTTTAGTGATACTAATTCCCCTCAAGTTTCTCTAGGGGTAAC
AATTTCTCTCTCTCTCTCTCTCTCTCTCTCTTATTATTATTAGTTTTAAT
TCGTTCGGTATCATTATTGTTTGAACATTTTGAATAGACTTAAGCACATA
ATCTTTAGAGATTGAGAGGGCTACCCTTAA