USDA_SNP0016, USDA_SNP0016 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0016
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00002Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr07chromosomeChr07:53650797..53650797 .
CM018225.1chromosomeCM018225.1:61756116..61756178 +
CM018212.1chromosomeCM018212.1:105714333..105714395 -
D5_11chromosomeD5_11:7091484..7091545 -
KI_11chromosomeKI_11:48678501..48678563 +
KI_11chromosomeKI_11:48716414..48716476 +
CM016624.1chromosomeCM016624.1:133097408..133097470 +
CM016624.1chromosomeCM016624.1:133127927..133127989 +
scaffold326.1supercontigscaffold326.1:185743..185805 -
At_chr1chromosomeAt_chr1:105841017..105841079 -
scaffold4942supercontigscaffold4942:20702..20764 +
A11chromosomeA11:85113022..85113084 +
Ghir_A11chromosomeGhir_A11:114733752..114733814 +
D11chromosomeD11:63865875..63865937 +
A11chromosomeA11:113212927..113212989 +
D11chromosomeD11:64392548..64392610 +
A11chromosomeA11:110867670..110867732 +
A11chromosomeA11:107655742..107655804 +
Gbar_D11chromosomeGbar_D11:61246372..61246434 +
Gbar_A11chromosomeGbar_A11:104173174..104173236 -
D11chromosomeD11:64158294..64158356 +
A11chromosomeA11:107286618..107286680 +
CM017633.1chromosomeCM017633.1:63950304..63950366 +
CM017620.1chromosomeCM017620.1:111130833..111130895 +
CM017659.1chromosomeCM017659.1:65526921..65526983 +
CM017659.1chromosomeCM017659.1:65407650..65407712 +
CM017646.1chromosomeCM017646.1:117582290..117582352 +
CM017711.1chromosomeCM017711.1:61222310..61222372 +
CM017698.1chromosomeCM017698.1:106268332..106268394 -
D11chromosomeD11:64566859..64566921 +
A11chromosomeA11:115598801..115598863 +
Chr11chromosomeChr11:3391172..3391234 +
B_11chromosomeB_11:92145584..92145646 +
B_11chromosomeB_11:92154327..92154389 +
Chr07chromosomeChr07:62047922..62047984 +
Chr01chromosomeChr01:5906859..5906921 +
chr07chromosomechr07:44498805..44498867 +
chr07chromosomechr07:44498531..44498593 +
Chr_07chromosomeChr_07:42251133..42251195 +
Chr_07chromosomeChr_07:42250590..42250652 +
Chr07chromosomeChr07:62763452..62763514 +
Chr07chromosomeChr07:38612201..38612262 +
Chr07chromosomeChr07:33146580..33146642 +
Chr07chromosomeChr07:41512902..41512964 +
E11chromosomeE11:105080765..105080827 +
F11chromosomeF11:91179657..91179719 +
Chr11chromosomeChr11:9758035..9758097 -
Chr11chromosomeChr11:9748062..9748124 -
Sequence
>USDA_SNP0016 ID=USDA_SNP0016; Name=USDA_SNP0016; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATAAGATTGCAAAGGCAATGAATGTCAGTATTTCCGAAGATGAA
GA[C/T]GAGACTTTAA