USDA_SNP0016, USDA_SNP0016 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0016
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00002Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:53650797..53650797 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018225.1chromosomeCM018225.1:61756116..61756178 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:105714333..105714395 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:7091484..7091545 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:48678501..48678563 +Gossypioides kirkii genome ISU_v3n/a
KI_11chromosomeKI_11:48716414..48716476 +Gossypioides kirkii genome ISU_v3n/a
CM016624.1chromosomeCM016624.1:133097408..133097470 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016624.1chromosomeCM016624.1:133127927..133127989 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold326.1supercontigscaffold326.1:185743..185805 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:105841017..105841079 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4942supercontigscaffold4942:20702..20764 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:85113022..85113084 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:114733752..114733814 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:63865875..63865937 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:113212927..113212989 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:64392548..64392610 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:110867670..110867732 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:107655742..107655804 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:61246372..61246434 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:104173174..104173236 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:64158294..64158356 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:107286618..107286680 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:63950304..63950366 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:111130833..111130895 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:65526921..65526983 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017659.1chromosomeCM017659.1:65407650..65407712 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:117582290..117582352 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:61222310..61222372 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:106268332..106268394 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:64566859..64566921 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:115598801..115598863 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:3391172..3391234 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:92145584..92145646 +Gossypium anomalum (B1) genome NSF_v1n/a
B_11chromosomeB_11:92154327..92154389 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:62047922..62047984 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:5906859..5906921 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:44498805..44498867 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr07chromosomechr07:44498531..44498593 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:42251133..42251195 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_07chromosomeChr_07:42250590..42250652 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:62763452..62763514 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:38612201..38612262 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:33146580..33146642 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:41512902..41512964 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:105080765..105080827 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:91179657..91179719 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:9758035..9758097 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeChr11:9748062..9748124 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0016 ID=USDA_SNP0016; Name=USDA_SNP0016; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATAAGATTGCAAAGGCAATGAATGTCAGTATTTCCGAAGATGAA
GA[C/T]GAGACTTTAA