USDA_SNP0073, USDA_SNP0073 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0073
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00013Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr06chromosomeChr06:50525148..50525148 .
CM018223.1chromosomeCM018223.1:50089026..50089088 +
CM018210.1chromosomeCM018210.1:76506360..76506422 +
D5_09chromosomeD5_09:43187111..43187173 +
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:84440565..84440627 +
D10_09chromosomeD10_09:698122..698184 -
CM016622.1chromosomeCM016622.1:726140..726202 -
scaffold1149.1supercontigscaffold1149.1:560438..560500 +
scaffold568.1supercontigscaffold568.1:540342..540404 -
D09chromosomeD09:50461223..50461285 +
A09chromosomeA09:74485358..74485420 +
Ghir_D09chromosomeGhir_D09:52246208..52246270 +
Ghir_A09chromosomeGhir_A09:81484668..81484730 +
D09chromosomeD09:51466079..51466141 +
A09chromosomeA09:82639622..82639684 +
D09chromosomeD09:52014820..52014882 +
A09chromosomeA09:82983248..82983310 +
D09chromosomeD09:50096798..50096860 +
A09chromosomeA09:79307185..79307247 +
Gbar_D09chromosomeGbar_D09:50936136..50936198 +
Gbar_A09chromosomeGbar_A09:77326250..77326312 +
D09chromosomeD09:53246750..53246812 +
A09chromosomeA09:78668581..78668643 +
CM017631.1chromosomeCM017631.1:51005832..51005894 +
CM017618.1chromosomeCM017618.1:78675762..78675824 +
CM017657.1chromosomeCM017657.1:52614749..52614811 +
CM017644.1chromosomeCM017644.1:82080576..82080638 +
CM017709.1chromosomeCM017709.1:51580534..51580596 +
CM017696.1chromosomeCM017696.1:78800050..78800112 +
D09chromosomeD09:53904149..53904211 +
A09chromosomeA09:84762730..84762792 +
Chr09chromosomeChr09:86575862..86575924 +
Chr09chromosomeChr09:49423130..49423192 +
B_09chromosomeB_09:69971955..69972017 +
Chr06chromosomeChr06:50306190..50306252 +
chr06chromosomechr06:42083791..42083853 +
Chr_06chromosomeChr_06:35428848..35428910 +
Chr06chromosomeChr06:51370799..51370861 +
Chr06chromosomeChr06:39291338..39291400 +
Chr06chromosomeChr06:29840087..29840149 +
Chr06chromosomeChr06:36665335..36665397 +
E09chromosomeE09:829317..829379 -
F09chromosomeF09:70093079..70093141 +
Chr09chromosomeChr09:130634007..130634069 -
Sequence
>USDA_SNP0073 ID=USDA_SNP0073; Name=USDA_SNP0073; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCCGTTGCAGCAAACAAGTTTCCTTGATATTTAGAATTTAAAGAAA
CACTGTC[A/G]AGAAA