CIR0307, CIR0307 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0307
AliasCIR307
Genbank IDAJ567250
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567250
Source Typegenomic
Repeat Motif(AC)18
PCR ConditionAnnealing temperature: 46
Primer 1CIR307_F: GACTTGAAAAGATTACACAC
Primer 2CIR307_R: GAATTTGCTGGCTCT
Product Length182
PolymorphismP_ CIR0307
Publication[view all]
CommentPrimer data obtained in 2005
Germplasm
Stock NameType
Guazuncho-2obsolete_cultivar
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567250
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
CIR307_FCIR307_FGossypium hirsutumprimer
CIR307_RCIR307_RGossypium hirsutumprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fiber strengthqFS.GG-F2_ch01.cz08Gossypium hirsutumQTL
fiber elongationqFEL.GG-RIL.15_ch15.xy12Gossypium hirsutumQTL
fiber strengthqFS.GG-F2_ch01.hd09Gossypium hirsutumQTL
micronaireqMIC.0s-RIL_ch15-2.zz10Gossypium hirsutumQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CIR307CIR307Gossypium hirsutummarker_locus
CIR307-176CIR307-176Gossypium hirsutummarker_locus
cir0307cir0307Gossypium hirsutummarker_locus
CIR307-160CIR307-160Gossypium hirsutummarker_locus
CIR307CIR307-44.687Gossypium hirsutummarker_locus
CIR307CIR307-134Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567250AJ567250Gossypium hirsutumsequence_feature


Sequence
>CIR0307 ID=CIR0307|Name=CIR0307|organism=Gossypium hirsutum|type=genetic_marker|length=182bp
GACTTGAAAAGATTACACACACACACACACACACACACACACACACACAC
ATCCTATAGTCATACCTAAATGGGAAACGGTCCCAAAAAGAGAATCTAAA
TTCAAAGTGCAAAAGCGAAAAACTACTTCGTTTTTAAAAGAAGTTACTTT
AGTACATCTTAAATTGCAGAGCCAGCAAATTC
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
17235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_D01N/AAD_chr.150CIR307
2TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c15N/AAD_chr.1575.21CIR307
3Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr15N/AAD_chr.15121.11CIR307
4DH962 x Jinmian-6, F2 (2009)DJ-F2_chr15N/AAD_chr.1572.4CIR307
5DH962 x Jinmian-6, F2 (2009)DJ-F2_chr15/LG14N/AAD_chr.1572.4CIR307
6Yumian-1 x 7235, RIL (2015)Y7-RIL_chr15N/AAD_chr.1588.9CIR307
7DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr01N/AAD_chr.0132.91CIR307
8DH962 X Ji Mian 5, F2 (2015)DJiM-F2_chr15-1N/AAD_chr.1532.91CIR307
9TM-1 x 3-79, RIL (2014)T3-RIL.14_chr15N/AAD_chr.1544.7CIR307
10GX1135 x GX100-2, F2 (2013)GG-F2_chr01N/AAD_chr.0192.4CIR307
11GX1135 x GX100-2, RIL (2015)GG-RIL.15_chr15N/AAD_chr.154.7CIR307
12GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr15N/AAD_chr.154.7CIR307
130-153 x sGK9708, RIL (2016)0s-RIL_chr15-2N/AAD_chr.1540.4CIR307
14DH962 x Ji Mian 5, RIL (2015)DJiM-RIL_chr15-1N/AAD_chr.15-10CIR307
15901-001 x sGK156, F2 (2019)Chr15N/AAD_chr.15158.14CIR307
16HS-46 x MARCABUCAG8US-1-88, RIL (2009)HS-46 x MARCABUCAG8US-1-88, RIL (2009).HSM-RIL_chr15N/AAD_chr.150CIR307-176
17AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr15N/AAD_chr.1552cir0307
18TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr15N/AAD_chr.1573.4CIR307-160
19TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr15/D1N/AAD_chr.1572.07CIR307-160
20TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.15N/AAD_chr.1544.69CIR307
21MGG-293-793, MAGIC (2018)MAGIC-19831_chr15N/AAD_chr.15134CIR307