Shan 5245

Germplasm Overview


Name	Shan 5245
Alias	PI 694578 [view all 3]
GRIN ID	PI 694578
Type	Obsolete Cultivar
Species	Gossypium hirsutum
Description	N/A
Origin Country	N/A
Origin Detail	N/A
Pedigree	N/A
Maternal Parent	N/A
Paternal Parent	N/A
Maternal Parent of	N/A
Paternal Parent of	N/A
Phenotypic Data	[view all 59]
SSR Genotype Data	[view all 104]
SNP Genotype Data	[view all 63056]
Map	N/A
DNA Library	N/A
Sequence	N/A
Comments	N/A
Reference	N/A

Alias


Synonym
SA 3203
SA-3203
PI 694578

Image


File Name	Legend	Dataset
SA-3203_CS12-3021_IMG_4764_L.jpg	[SA-3203] leaf, College Station Plot# 3020, 2012	NCGC digital imaging (College Station, 2012)
SA-3203_CS12-3021_MG_3657_LB.jpg	[SA-3203] leaf close up of the back surface, College Station Plot# 3021, 2012	NCGC digital imaging (College Station, 2012)
SA-3203_CS12-3021_MG_7286_B.jpg	[SA-3203] green boll, College Station Plot# 3021, 2012	NCGC digital imaging (College Station, 2012)
SA-3203_CS12-3021_MG_7287_BO.jpg	[SA-3203] boll open, College Station Plot# 3021, 2012	NCGC digital imaging (College Station, 2012)
SA-3203_CS12-3021_MG_7288_BN.jpg	[SA-3203] boll showing nectaries, College Station Plot# 3021, 2012	NCGC digital imaging (College Station, 2012)

Phenotypic Data

Total 59 trait scores

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#	Dataset	Descriptor	Value	Environment	Plot
1	NCGC germplasm evaluation, T06	productiveness	25-36 per plant	MX_CLM_TCM_2006	545
2	NCGC germplasm evaluation, T09	leaf color	green	MX_CLM_TCM_2009	836
3	NCGC germplasm evaluation, T09	leaf color	green	MX_CLM_TCM_2009	835
4	NCGC germplasm evaluation, T09	trichome density on leaf	moderate	MX_CLM_TCM_2009	835
5	NCGC germplasm evaluation, T09	trichome density on leaf	moderate	MX_CLM_TCM_2009	836
6	NCGC germplasm evaluation, T09	trichome density on stem	moderate	MX_CLM_TCM_2009	836
7	NCGC germplasm evaluation, T09	trichome density on stem	moderate	MX_CLM_TCM_2009	835
8	NCGC germplasm evaluation, T09	plot plant stand	1 plant	MX_CLM_TCM_2009	836
9	NCGC germplasm evaluation, T09	plot plant stand	1 plant	MX_CLM_TCM_2009	835

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Ssr Genotype Data

Total 104 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	NCGC_SNTD_SSR_genotype_2015	gh052	genetic_marker	133\|133	gh052_133; gh052_133
2	NCGC_SNTD_SSR_genotype_2015	bnl2544	genetic_marker	216\|216	bnl2544_216; bnl2544_216
3	NCGC_SNTD_SSR_genotype_2015	dpl0618	genetic_marker	191\|191	dpl0618_191; dpl0618_191
4	NCGC_SNTD_SSR_genotype_2015	cir0202	genetic_marker	177\|177	cir0202_177; cir0202_177
5	NCGC_SNTD_SSR_genotype_2015	nau2277	genetic_marker	123\|123	nau2277_123; nau2277_123
6	NCGC_SNTD_SSR_genotype_2015	bnl3985	genetic_marker	169\|198	bnl3985_169; bnl3985_198
7	NCGC_SNTD_SSR_genotype_2015	cir0218	genetic_marker	165\|175\|179	cir0218_165; cir0218_175; cir0218_179
8	NCGC_SNTD_SSR_genotype_2015	jespr0291	genetic_marker	161\|161	jespr0291_161; jespr0291_161
9	NCGC_SNTD_SSR_genotype_2015	tmb1648	genetic_marker	169\|180	tmb1648_169; tmb1648_180
10	NCGC_SNTD_SSR_genotype_2015	jespr0293	genetic_marker	87\|92	jespr0293_87; jespr0293_92
11	NCGC_SNTD_SSR_genotype_2015	dpl0405	genetic_marker	251\|251	dpl0405_251; dpl0405_251
12	NCGC_SNTD_SSR_genotype_2015	jespr0065	genetic_marker	133\|133	jespr0065_133; jespr0065_133
13	NCGC_SNTD_SSR_genotype_2015	gh537	genetic_marker	168\|171	gh537_168; gh537_171
14	NCGC_SNTD_SSR_genotype_2015	cir0169	genetic_marker	136\|136	cir0169_136; cir0169_136
15	NCGC_SNTD_SSR_genotype_2015	cir0081	genetic_marker	221\|221	cir0081_221; cir0081_221
16	NCGC_SNTD_SSR_genotype_2015	tmb2295	genetic_marker	216\|247\|262	tmb2295_216; tmb2295_247; tmb2295_262
17	NCGC_SNTD_SSR_genotype_2015	bnl3545	genetic_marker	112\|128\|182	bnl3545_112; bnl3545_128; bnl3545_182
18	NCGC_SNTD_SSR_genotype_2015	mghes0076	genetic_marker	192\|225	mghes0076_192; mghes0076_225
19	NCGC_SNTD_SSR_genotype_2015	cir0165	genetic_marker	207\|219	cir0165_207; cir0165_219
20	NCGC_SNTD_SSR_genotype_2015	dpl0039	genetic_marker	238\|245	dpl0039_238; dpl0039_245
21	NCGC_SNTD_SSR_genotype_2015	gh495	genetic_marker	80\|80	gh495_80; gh495_80
22	NCGC_SNTD_SSR_genotype_2015	mghes0029	genetic_marker	208\|208	mghes0029_208; mghes0029_208
23	NCGC_SNTD_SSR_genotype_2015	tmb2018	genetic_marker	232\|232	tmb2018_232; tmb2018_232
24	NCGC_SNTD_SSR_genotype_2015	jespr0220	genetic_marker	127\|161	jespr0220_127; jespr0220_161
25	NCGC_SNTD_SSR_genotype_2015	bnl4017	genetic_marker	221\|233	bnl4017_221; bnl4017_233

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Snp Genotype Data

Total 63,056 records

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#	Dataset	Marker Name	Allele	Genotype
1	TAMU_SNP63K_genotype	USDA_SNP0258	A/G	G
2	TAMU_SNP63K_genotype	USDA_SNP0271	A/G	A
3	TAMU_SNP63K_genotype	USDA_SNP0278	G/T	T
4	TAMU_SNP63K_genotype	USDA_SNP0286	A/G	G
5	TAMU_SNP63K_genotype	USDA_SNP0290	A/G	G
6	TAMU_SNP63K_genotype	USDA_SNP0291	A/C	C
7	TAMU_SNP63K_genotype	USDA_SNP0298	C/T	C
8	TAMU_SNP63K_genotype	USDA_SNP0304	C/T	C
9	TAMU_SNP63K_genotype	USDA_SNP0306	C/T	-
10	TAMU_SNP63K_genotype	USDA_SNP0314	C/T	C
11	TAMU_SNP63K_genotype	USDA_SNP0323	A/G	G
12	TAMU_SNP63K_genotype	USDA_SNP0324	A/G	A
13	TAMU_SNP63K_genotype	USDA_SNP0332	C/T	T
14	TAMU_SNP63K_genotype	USDA_SNP0337	C/T	C
15	TAMU_SNP63K_genotype	USDA_SNP0338	C/T	-
16	TAMU_SNP63K_genotype	USDA_SNP0357	A/G	A
17	TAMU_SNP63K_genotype	USDA_SNP0361	C/T	T
18	TAMU_SNP63K_genotype	USDA_SNP0363	A/G	A
19	TAMU_SNP63K_genotype	USDA_SNP0365	C/T	-
20	TAMU_SNP63K_genotype	USDA_SNP0368	A/C	A
21	TAMU_SNP63K_genotype	USDA_SNP0370	A/C	-
22	TAMU_SNP63K_genotype	USDA_SNP0377	A/G	G
23	TAMU_SNP63K_genotype	USDA_SNP0379	A/G	A
24	TAMU_SNP63K_genotype	USDA_SNP0382	A/G	A
25	TAMU_SNP63K_genotype	USDA_SNP0385	A/C	C

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Cross References

External references for this accession


Database	Accession
GRIN	PI 694578

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