Gh537, Gh537 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh537
Genbank IDDQ908476
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908476
Source Typegenomic
Repeat MotifAGA(8)
Primer 1Gh537_F: GTTGGGTGGCAATTCCTTTTAGATC
Primer 2Gh537_R: AAAGCTAATCCCTATACCTTTTCTTCG
PolymorphismP_ Gh537
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:9093366..9093538 -
A06chromosomeA06:10823553..10823722 -
CM018220.1chromosomeCM018220.1:8274474..8274634 -
CM018207.1chromosomeCM018207.1:10779070..10779239 -
D5_06chromosomeD5_06:8323243..8323417 -
D10_06chromosomeD10_06:51842406..51842581 +
CM016619.1chromosomeCM016619.1:133358485..133358645 +
Dt_chr10chromosomeDt_chr10:22517518..22517690 +
At_chr10chromosomeAt_chr10:70300354..70300523 -
D06chromosomeD06:8197205..8197377 -
A06chromosomeA06:9422912..9423081 -
Ghir_D06chromosomeGhir_D06:8969531..8969703 -
Ghir_A06chromosomeGhir_A06:10981359..10981528 -
D06chromosomeD06:8692265..8692437 -
A06chromosomeA06:10403336..10403505 -
D06chromosomeD06:8953919..8954091 -
A06chromosomeA06:10856846..10857015 -
D06chromosomeD06:8444017..8444189 -
A06chromosomeA06:10806889..10807058 -
Dt06chromosomeDt06:8354380..8354540 -
At06chromosomeAt06:10620889..10621058 -
scaffold7679supercontigscaffold7679:494716..494876 -
scaffold1249supercontigscaffold1249:317269..317438 -
Gbar_D06chromosomeGbar_D06:8398152..8398312 -
Gbar_A06chromosomeGbar_A06:10523933..10524102 -
D06chromosomeD06:8314562..8314722 -
A06chromosomeA06:10593259..10593428 -
CM017628.1chromosomeCM017628.1:8914247..8914416 -
CM017615.1chromosomeCM017615.1:10872946..10873115 -
CM017654.1chromosomeCM017654.1:8493068..8493243 -
CM017641.1chromosomeCM017641.1:10689128..10689300 -
CM017706.1chromosomeCM017706.1:8467238..8467398 -
CM017693.1chromosomeCM017693.1:10896973..10897142 -
D06chromosomeD06:9084712..9084884 -
A06chromosomeA06:10917614..10917783 -
Chr06chromosomeChr06:8108967..8109148 -
B_06chromosomeB_06:86710028..86710197 +
chr10chromosomechr10:7506268..7506437 -
Chr10chromosomeChr10:8897140..8897329 -
Chr10chromosomeChr10:6215166..6215344 -
Chr10chromosomeChr10:5320726..5320887 -
E06chromosomeE06:105662988..105663157 +
F06chromosomeF06:9181958..9182129 -
Chr10chromosomeGh537:1..708 .
Chr10:8225681..8226372 -
scaffold163supercontigGh537:1..708 .
scaffold163:999640..1000331 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908476DQ908476Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch25_Dt.06N/A80.06Gh537View
2Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A81.71Gh537View
3TM-1 x 3-79, RIL (2014)AD_ch25_Dt.06N/A74.6Gh537View
40-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A56Gh537View
50-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A120.5Gh537View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch25_Dt.06N/A62.6Gh537View
7TM-1 x 3-79, RIL (2012.v3)AD_ch25_Dt.06N/A74.6GH537View
8TM-1 x Hai-7124, BC1 (2012)AD_ch25_Dt.06N/A72.5Gh537-165View
Sequence
>Gh537 ID=Gh537; Name=Gh537; organism=Gossypium hirsutum; type=genetic_marker; length=173bp
GTTGGGTGGCAATTCCTTTTAGATCTAAAACATTGTATTGTTTTTGCTGG
AACAACAAAGAATAATTAATTATCTTATTTTAGGGAGAAGAGAGAAAAGG
AAAGAAATGAGAAGAAGAAGAAGAAGAAGAAGAAATTAAATTGTTTCGAA
GAAAAGGTATAGGGATTAGCTTT