JESPR0293, JESPR0293 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0293
AliasJESPR293
JESPR0293=CM0167
CM167
CM0167
Genbank IDAF351531
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351531.1
Source Typegenomic
Repeat Motif(GAA)7
Primer 1JESPR0293_F: CGAGATTTTAAGATTGTGC
Primer 2JESPR0293_R: TGATGGCAAAAGCACC
PolymorphismP_ JESPR0293
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:7703562..7703658 +
A02chromosomeA02:7955842..7955932 +
CM018216.1chromosomeCM018216.1:6946059..6946152 +
CM018203.1chromosomeCM018203.1:7088647..7088737 +
D5_03chromosomeD5_03:56923305..56923398 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4492409..4492499 -
D10_03chromosomeD10_03:58414372..58414477 -
CM016616.1chromosomeCM016616.1:144122413..144122503 -
scaffold795.1supercontigscaffold795.1:461081..461171 -
Dt_chr5chromosomeDt_chr5:6123053..6123149 -
D02chromosomeD02:7505796..7505892 +
A02chromosomeA02:7292448..7292538 +
Ghir_D02chromosomeGhir_D02:7303509..7303605 +
Ghir_A02chromosomeGhir_A02:7247433..7247523 +
D02chromosomeD02:7009207..7009303 +
A02chromosomeA02:6967704..6967794 +
D02chromosomeD02:7345256..7345352 +
A02chromosomeA02:7502032..7502122 +
D02chromosomeD02:7287763..7287859 +
A02chromosomeA02:7479892..7479982 +
Dt02chromosomeDt02:6352790..6352883 +
At02chromosomeAt02:7975872..7975962 +
scaffold4209supercontigscaffold4209:94217..94307 +
scaffold34911supercontigscaffold34911:32783..32876 +
Scaffold3260supercontigScaffold3260:12130..12220 +
Gbar_D02chromosomeGbar_D02:7451610..7451703 +
D02chromosomeD02:6950270..6950363 +
A02chromosomeA02:7130399..7130489 +
CM017624.1chromosomeCM017624.1:7726911..7727007 +
CM017611.1chromosomeCM017611.1:7184781..7184871 +
CM017650.1chromosomeCM017650.1:7998265..7998367 +
CM017637.1chromosomeCM017637.1:7504454..7504544 +
CM017702.1chromosomeCM017702.1:7370933..7371026 +
CM017689.1chromosomeCM017689.1:7261772..7261862 +
D02chromosomeD02:7554549..7554645 +
A02chromosomeA02:7567350..7567440 +
Chr03chromosomeChr03:6615233..6615326 +
B_03chromosomeB_03:99191424..99191523 -
Chr05chromosomeChr05:7276510..7276603 +
chr05chromosomechr05:5371875..5371968 +
Chr_05chromosomeChr_05:5593698..5593803 +
Chr05chromosomeChr05:7421299..7421407 +
Chr05chromosomeChr05:5495222..5495321 +
Chr05chromosomeChr05:4421653..4421746 +
Chr05chromosomeChr05:6192523..6192619 +
E03chromosomeE03:9685977..9686076 +
F03chromosomeF03:7326586..7326680 +
Chr03chromosomeChr03:194573341..194573437 -
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351531.1AF351531.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch14_Dt.02N/A82.1JESP293View
2TM-1 x 3-79, RIL (2012)AD_ch14_Dt.02N/A82.61JESPR293View
3Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A57.36JESPR293View
4TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A43.8JESPR293View
5CCRI-36 x G2005, RIL (2016)AD_ch14_Dt.02N/A131.54JESPR293View
6Monsanto SSR Bin Map, (2009)AD_ch14_Dt.02N/A101JESPR293View
7AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A49jespr0293View
8TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A76.82JESPR293-95View
9TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A36.8JESPR293-95View
10TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A43.81JESPR293View
11PD 94042 x (AD)4-08, F2 (2016)AD_ch14_Dt.02N/A138.5JESPR293View
12MGG-293-793, MAGIC (2018)AD_ch14_Dt.02N/A101.6JESPR293View
Sequence
>JESPR0293 ID=JESPR0293; Name=JESPR0293; organism=Gossypium hirsutum; type=genetic_marker; length=97bp
CGAGATTTTAAGATTGTGCTTTGTGTTTTAAGAAGTAAATAGTGCAGTAT
AAGAAGAAGAAGAAGAAGAAGAAGCAGAAATGGTGCTTTTGCCATCA