Gh495, Gh495 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh495
Genbank IDDQ908434
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908434
Source Typegenomic
Repeat MotifCA(13)
Primer 1Gh495_F: AAACTCTTAGCCTTGTCCATGAAAG
Primer 2Gh495_R: TGATCAAAGATGGGAGAAAAGAGTC
PolymorphismP_ Gh495
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A09chromosomeA09:66144372..66144456 +
CM018210.1chromosomeCM018210.1:61859158..61859236 +
At_chr6chromosomeAt_chr6:49216541..49216625 +
A09chromosomeA09:61309355..61309439 +
Ghir_A09chromosomeGhir_A09:65983754..65983838 +
A09chromosomeA09:67818823..67818907 +
A09chromosomeA09:67737562..67737646 +
A09chromosomeA09:64632051..64632135 +
scaffold3791supercontigscaffold3791:1130085..1130163 -
Gbar_A09chromosomeGbar_A09:62311716..62311794 +
A09chromosomeA09:63775722..63775800 +
CM017618.1chromosomeCM017618.1:63540130..63540208 +
CM017644.1chromosomeCM017644.1:66460520..66460600 +
CM017696.1chromosomeCM017696.1:63699493..63699571 +
A09chromosomeA09:69056168..69056252 +
Chr06chromosomeGh495:1..597 .
Chr06:38177186..38177772 +
Chr6chromosomeGh495:1..597 .
Chr6:28945043..28945629 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908434DQ908434Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch09_At.09N/A97.61Gh495View
2TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A78.04Gh495View
3TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A63.1Gh495View
4TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A63.12GH495View
5TM-1 x Hai-7124, BC1 (2012)AD_ch09_At.09N/A74.7Gh495-80View
Sequence
>Gh495 ID=Gh495; Name=Gh495; organism=Gossypium hirsutum; type=genetic_marker; length=85bp
AAACTCTTAGCCTTGTCCATGAAAGGGGATCACACACACACACACACACA
CACACATAGAGACTCTTTTCTCCCATCTTTGATCA