MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_1734807	Chr01_1734806	marker_locus	50.68 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG26	CSIRO_D5chr01_6033726	Chr01_6033726	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG26	CSIRO_D5chr01_6571832	Chr01_6571831	marker_locus	4.62 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG26	CSIRO_D5chr01_6396369	Chr01_6396368	marker_locus	10.6 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG26	CSIRO_D5chr01_6794367	Chr01_6794366	marker_locus	11.47 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr11_569037	Chr11_569036	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr07_24166145	Chr07_24166145	marker_locus	12.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_34231196	Chr01_34231195	marker_locus	27.18 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_10848364	Chr01_10848363	marker_locus	51.99 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_11311968	Chr01_11311967	marker_locus	54.66 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_13445285	Chr01_13445284	marker_locus	59.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_13442176	Chr01_13442175	marker_locus	60.67 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5Chr07_19347576	Chr07_19347575	marker_locus	62.19 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_14604377	Chr01_14604377	marker_locus	63.7 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_14315598	Chr01_14315597	marker_locus	69.02 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_17203180	Chr01_17203179	marker_locus	75.97 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_18322535	Chr01_18322534	marker_locus	78.62 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_19924766	Chr01_19924765	marker_locus	82.23 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_17036536	Chr01_17036535	marker_locus	89.67 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_17367175	Chr01_17367174	marker_locus	94.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_16734055	Chr01_16734055	marker_locus	96.16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_18111370	Chr01_18111369	marker_locus	98.34 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5Chr01_19198466	Chr01_19198465	marker_locus	101.5 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_20538445	Chr01_20538445	marker_locus	106.4 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_22024733	Chr01_22024732	marker_locus	110.73 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)