MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_23229893	Chr02_23229892	marker_locus	83.42 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_20671565	Chr02_20671565	marker_locus	88.74 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5Chr02_20438220	Chr02_20438219	marker_locus	90.46 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_20007523	Chr02_20007523	marker_locus	92.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5Chr02_19875200	Chr02_19875199	marker_locus	94.66 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_15906157	Chr02_15906157	marker_locus	101.56 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_13032669	Chr02_13032668	marker_locus	108.27 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_13092964	Chr02_13092963	marker_locus	115.82 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_9400220	Chr02_9400219	marker_locus	127.9 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_9510668	Chr02_9510667	marker_locus	134.74 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_10127987	Chr02_10127986	marker_locus	135.39 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_8703046	Chr02_8703045	marker_locus	138.98 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_8557909	Chr02_8557908	marker_locus	140.28 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_7777522	Chr02_7777521	marker_locus	144.36 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_3926647	Chr02_3926647	marker_locus	165.19 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr12_15951742	Chr12_15951742	marker_locus	175.27 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5Chr02_3056473	Chr02_3056472	marker_locus	178.21 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_2448156	Chr02_2448155	marker_locus	184.43 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5Chr02_1612344	Chr02_1612343	marker_locus	190.5 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_1633474	Chr02_1633473	marker_locus	191.37 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_1193186	Chr02_1193185	marker_locus	196.98 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5Chr02_790877	Chr02_790876	marker_locus	200.81 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5Chr02_646749	Chr02_646748	marker_locus	202.1 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_729048	Chr02_729047	marker_locus	209.68 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_487286	Chr02_487285	marker_locus	210.99 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)