MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_60205113	Chr02_60205113	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5Chr02_60692884	Chr02_60692883	marker_locus	5.11 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_60734568	Chr02_60734567	marker_locus	5.75 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_60856375	Chr02_60856374	marker_locus	6.75 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr10_48842109	Chr10_48842108	marker_locus	8.8 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_61086477	Chr02_61086476	marker_locus	9.23 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_61506753	Chr02_61506752	marker_locus	11.05 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_61727063	Chr02_61727062	marker_locus	15.11 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5Chr02_61821157	Chr02_61821156	marker_locus	16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_61939094	Chr02_61939093	marker_locus	19.21 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_62047627	Chr02_62047626	marker_locus	21.16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_62533118	Chr02_62533117	marker_locus	23.34 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_62613622	Chr02_62613621	marker_locus	30.29 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	CSIRO_D5chr02_62179690	Chr02_62179689	marker_locus	30.71 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_4184938	Chr01_4184938	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_4106180	Chr01_4106179	marker_locus	1.56 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_4124120	Chr01_4124119	marker_locus	2.43 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr06_37538593	Chr06_37538593	marker_locus	5.77 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_3554060	Chr01_3554060	marker_locus	6.85 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_3274381	Chr01_3274380	marker_locus	14.88 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_2868625	Chr01_2868624	marker_locus	25.24 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_1039106	Chr01_1039105	marker_locus	41.4 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_1218950	Chr01_1218949	marker_locus	44.16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_1504450	Chr01_1504449	marker_locus	47.46 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG25	CSIRO_D5chr01_1482913	Chr01_1482912	marker_locus	48.46 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)