MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_7360149	Chr13_7360148	marker_locus	59.15 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_7133153	Chr13_7133152	marker_locus	64.97 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_7736949	Chr13_7736948	marker_locus	66.98 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_45576096	Chr13_45576095	marker_locus	85.16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_45810554	Chr13_45810553	marker_locus	87.11 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_45246090	Chr13_45246089	marker_locus	91.19 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_42921279	Chr13_42921278	marker_locus	96.3 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_42411850	Chr13_42411850	marker_locus	96.52 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_41398512	Chr13_41398511	marker_locus	99.01 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_41152808	Chr13_41152807	marker_locus	99.88 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_40833431	Chr13_40833430	marker_locus	100.53 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5Chr13_38943404	Chr13_38943403	marker_locus	102.25 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_36775470	Chr13_36775470	marker_locus	104.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_39791990	Chr13_39791989	marker_locus	107.1 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_40735470	Chr13_40735469	marker_locus	108.4 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_40277525	Chr13_40277524	marker_locus	113.59 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_37945053	Chr13_37945053	marker_locus	116.27 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_38849125	Chr13_38849124	marker_locus	117.58 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_42779926	Chr13_42779926	marker_locus	121.99 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_46097815	Chr13_46097814	marker_locus	130.92 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_49944226	Chr13_49944225	marker_locus	141.43 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_48711872	Chr13_48711871	marker_locus	145.78 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr10_61321005	Chr10_61321004	marker_locus	157.26 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5chr13_53544334	Chr13_53544333	marker_locus	158.78 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C18_LG54	CSIRO_D5s510_3800	scaffold_510_3800	marker_locus	160.07 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)