MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_25728779	Chr01_25728778	marker_locus	114.81 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_26571523	Chr01_26571522	marker_locus	115.89 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr13_36122695	Chr13_36122695	marker_locus	116.54 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_26967114	Chr01_26967113	marker_locus	121.96 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_27565998	Chr01_27565997	marker_locus	122.81 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_28658232	Chr01_28658232	marker_locus	125.69 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_42514485	Chr01_42514485	marker_locus	130.25 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_44640755	Chr01_44640754	marker_locus	133.38 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_35743801	Chr01_35743800	marker_locus	140.96 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_39676689	Chr01_39676688	marker_locus	141.39 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_35400522	Chr01_35400522	marker_locus	141.6 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_33374840	Chr01_33374840	marker_locus	141.82 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5s14_253142	scaffold_14_253142	marker_locus	142.26 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr03_25619210	Chr03_25619210	marker_locus	144.76 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_39349375	Chr01_39349375	marker_locus	149.87 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_34373098	Chr01_34373097	marker_locus	151.16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5s14_947111	scaffold_14_947111	marker_locus	152.23 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5s14_755887	scaffold_14_755887	marker_locus	152.86 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_39144341	Chr01_39144340	marker_locus	153.5 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5s14_347763	scaffold_14_347763	marker_locus	153.71 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_33727717	Chr01_33727716	marker_locus	154.35 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5Chr01_39716549	Chr01_39716548	marker_locus	155.42 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_36175973	Chr01_36175972	marker_locus	156.27 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5chr01_34983559	Chr01_34983559	marker_locus	156.91 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C16_LG27	CSIRO_D5s14_545998	scaffold_14_545998	marker_locus	157.75 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)