MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_41575629	Chr05_41575629	marker_locus	248.16 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_10298721	Chr05_10298720	marker_locus	259.31 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_10145116	Chr05_10145116	marker_locus	259.53 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_7150355	Chr05_7150355	marker_locus	265.93 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_6925949	Chr05_6925948	marker_locus	266.99 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_7975402	Chr05_7975401	marker_locus	270.83 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_8344106	Chr05_8344105	marker_locus	278.66 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG07	CSIRO_D5chr05_8683881	Chr05_8683881	marker_locus	280.17 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5Chr05_60296523	Chr05_60296522	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr05_61229842	Chr05_61229841	marker_locus	4.43 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr03_5240163	Chr03_5240163	marker_locus	13.23 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr05_60653740	Chr05_60653739	marker_locus	14.54 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr05_61601492	Chr05_61601491	marker_locus	20.82 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr05_63243438	Chr05_63243437	marker_locus	33.45 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr05_63056611	Chr05_63056610	marker_locus	41.61 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr05_63948199	Chr05_63948198	marker_locus	45.98 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr05_62763556	Chr05_62763555	marker_locus	51.9 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C14_LG08	CSIRO_D5chr05_62318516	Chr05_62318515	marker_locus	57.83 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_58852301	Chr02_58852301	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_56531056	Chr02_56531055	marker_locus	13.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_56326548	Chr02_56326547	marker_locus	14.53 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_55961001	Chr02_55961001	marker_locus	15.64 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_55654383	Chr02_55654382	marker_locus	22.47 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_52887907	Chr02_52887907	marker_locus	31.1 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG03	CSIRO_D5chr02_46566350	Chr02_46566350	marker_locus	34.59 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)