MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_23416226	Chr08_23416225	marker_locus	35.94 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_14968426	Chr08_14968425	marker_locus	37.02 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5Chr08_54815050	Chr08_54815049	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5Chr08_54007232	Chr08_54007231	marker_locus	9.77 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_53542213	Chr08_53542212	marker_locus	11.8 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5Chr08_53747469	Chr08_53747468	marker_locus	17.65 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_53166082	Chr08_53166081	marker_locus	20.54 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5Chr08_52850798	Chr08_52850797	marker_locus	27.77 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_53073646	Chr08_53073645	marker_locus	28.84 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_52619352	Chr08_52619351	marker_locus	30.82 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_52597645	Chr08_52597644	marker_locus	32.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_51356940	Chr08_51356939	marker_locus	35.1 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_51442372	Chr08_51442371	marker_locus	35.32 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_51697096	Chr08_51697095	marker_locus	36.39 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_51774153	Chr08_51774152	marker_locus	37.25 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_52088017	Chr08_52088016	marker_locus	38.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5Chr08_51934826	Chr08_51934825	marker_locus	44.41 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_51552770	Chr08_51552769	marker_locus	46.36 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_51295225	Chr08_51295224	marker_locus	47.2 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_51197652	Chr08_51197651	marker_locus	48.28 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_48712576	Chr08_48712576	marker_locus	62.43 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5Chr08_49168923	Chr08_49168922	marker_locus	65.84 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_49435264	Chr08_49435263	marker_locus	72.09 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_47053892	Chr08_47053891	marker_locus	87.11 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG48	CSIRO_D5chr08_46542399	Chr08_46542398	marker_locus	88.29 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)