MCU-5 x Siokra 1-4, RIL (2015 SNP)

Map Overview


Name	MCU-5 x Siokra 1-4, RIL (2015 SNP)
Species	Gossypium hirsutum
Genome group	AD
Map type	genetic
Map unit	cM
Number of loci	1244
Number of QTL	4
Number of linkage groups	53
Publication	[view all]
Contact	N/A

Publication


Year	Publications
2014	Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7.

Map Loci

This map contains 1,244 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG42	CSIRO_D5chr07_50375576	Chr07_50375576	marker_locus	18.82 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG42	CSIRO_D5chr07_49007418	Chr07_49007417	marker_locus	24.48 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG42	CSIRO_D5chr01_52780637	Chr01_52780637	marker_locus	31.22 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG42	CSIRO_D5chr07_47515908	Chr07_47515907	marker_locus	37.47 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG42	CSIRO_D5chr07_47084408	Chr07_47084407	marker_locus	44.59 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG42	CSIRO_D5chr07_41665073	Chr07_41665072	marker_locus	53.18 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG42	CSIRO_D5chr07_41536045	Chr07_41536044	marker_locus	53.65 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5chr07_60032258	Chr07_60032257	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5chr07_60386867	Chr07_60386866	marker_locus	1.53 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5Chr07_60852581	Chr07_60852580	marker_locus	6.87 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5chr07_60695109	Chr07_60695108	marker_locus	13.55 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5Chr07_58625733	Chr07_58625732	marker_locus	25.03 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5chr07_56795900	Chr07_56795899	marker_locus	36.9 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5chr07_56141498	Chr07_56141497	marker_locus	39.12 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5chr07_55964153	Chr07_55964152	marker_locus	42.25 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	CSIRO_D5chr07_54556289	Chr07_54556289	marker_locus	51.44 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_6094718	Chr08_6094718	marker_locus	0 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_4592617	Chr08_4592617	marker_locus	5.44 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_4285090	Chr08_4285089	marker_locus	15.03 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_4086151	Chr08_4086150	marker_locus	16.32 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_4124030	Chr08_4124029	marker_locus	16.98 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_7310368	Chr08_7310367	marker_locus	25.09 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_8027281	Chr08_8027281	marker_locus	27.29 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_7756193	Chr08_7756192	marker_locus	28.14 cM
MCU-5 x Siokra 1-4, RIL (2015 SNP).C12_LG47	CSIRO_D5chr08_10463701	Chr08_10463701	marker_locus	33.75 cM

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Map QTL

This map contains 4 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
MCU-5 x Siokra 1-4, RIL (2015 SNP).C04_LG15	qPOLLENCL.MS-chr04	QTL	0 cM	19.03 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C06_LG21	qDTL.MS-chr06	QTL	32.33 cM	33.83 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C11_LG43	qDTL.MS-chr11	QTL	0 cM	13.55 cM	-
MCU-5 x Siokra 1-4, RIL (2015 SNP).C15_LG04	qLFSP.MS-chr15	QTL	0 cM	8.8 cM	-

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MCU-5 x Siokra 1-4, RIL (2015 SNP)