CSIRO_D5chr01_14604377 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr01_14604377
AliasChr01_14604377
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceATCGGGGAAAATCAAAGGTTATCGAATAGTCGATCCATTCCGTTTATCCCGAAAACAAGG TAAGTTCATAAGTAAATAAATGTTTTTAAATTTAAATGTA
3' Flanking SequenceATGTTTTATACATTGCTGAATTTGATTAATTATAGATATACATTGCTGAATTTGATTGTT TTATATATTGCCGAATTCGAATTGTTTAGAGTTATACATT
SpeciesGossypium hirsutum
GermplasmSiokra 1-4
MCU-5 (PI 694627)
Source Typerestriction-site associated DNA
RNA-seq and restriction-site associated DNA
Restriction EnzymeEcoRI; ApekI; SbfI
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D5_07chromosomeD5_07:14773025..14773225 +
Chr07chromosomeChr07:38810597..38810796 -
Chr01chromosomeChr01:14944928..14945128 +
Germplasm
Stock NameType
Siokra 1-4accession
MCU-5 (PI 694627)accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1MCU-5 x Siokra 1-4, RIL (2015 SNP)AD_ch16_Dt.07N/A63.7Chr01_14604377View
Sequence
>CSIRO_D5chr01_14604377 ID=CSIRO_D5chr01_14604377; Name=CSIRO_D5chr01_14604377; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
ATCGGGGAAAATCAAAGGTTATCGAATAGTCGATCCATTCCGTTTATCCC
GAAAACAAGGTAAGTTCATAAGTAAATAAATGTTTTTAAATTTAAATGTA
[T/C]ATGTTTTATACATTGCTGAATTTGATTAATTATAGATATACATTG
CTGAATTTGATTGTTTTATATATTGCCGAATTCGAATTGTTTAGAGTTAT
ACATT